Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06125 ATGTTTCTAACAAGGACTGAATATGATCGAGGAGTCAATACTTTTTCTCCCGAAGGTCGTTTGTTTCAGGTTGAATATGCAATCGAAGCCATCAAGCTGGGATCAACCGCGATTGGGTTGAAGACAAAAGAAGGTGTTGTTCTTGCTGTTGAAAAGCGTATCACTTCGCCTCTACTGGAGCCTAGCAGTGTGGAGAAAATAATGGAAATTGATGACCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCATAGATTTTCATATGGTGAACCAATGACTGTTGAGTCCACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGTGAGGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGAACATTCTGGCAATGCAATGCAAAGGCTATTGGTTCTGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTGACTCTTCAAGAGGCTGAGACTATTGCTTTATCTATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCATATCATCTTTATACTCCTTCTGAAGTGGAAGCTGTGATAGCACGCCTATGA 714 0.4426 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVIARL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06125 237 Coils Coil 234 237 - -
Trre1g06125 237 FunFam Proteasome subunit alpha type 1 237 - -
Trre1g06125 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Trre1g06125 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 13 234 - -
Trre1g06125 237 Pfam Proteasome subunit 31 216 IPR001353 GO:0005839|GO:0051603
Trre1g06125 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
Trre1g06125 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Trre1g06125 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Trre1g06125 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Trre1g06125 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 234 IPR029055 -
Trre1g06125 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06125 Trre-Chr1 65232042 65235702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06125 K02729 - gmx:100499756 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06125 1 65232042 65235702 Trre1g06125 1 65232042 65235702 ECH