Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05920 ATGGGTTTGGGAACCACCACCGTTCCTATGAATATCCTTCCTCAATTCGGGTTGCTCCGAACCCATTTAACTCCTATTCGGGTCAACAACTCTTCCGGGTTCAGCTTCCCTCACTCTCGAAGAAAGAATAACAGTTTTGGTAAAATCGTTTGCTTCGCCGTTGATGACGAACTCAGACAGAACCAACAACAGTTGAGTACTACTTCATCTAGAATTGGTTCCGCCATTGAAGATAGACCCGGTGAAGAAGCATTGGAAAATTTTAACGAAGATGGGGAAAGAAGTCCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCTGATGATAAGGAAATGAGTCTATTTGATCATCTTGAAGAGCTGCGACAGAGAATCTTTGTATCAGTTCTGGGAGTTGGAGGAAGCATTTTAGGATGCTTTGCATTTTCAAAAGATTTGGTAAGGCTTCTCGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGCTAGCTCCTGGCGAATTTTTCTTCACCACATTAAAGGTGTCTGGATACTGTGGCCTCCTCTTGGGAAGTCCCATCATTCTCTATGAAATCATAGCCTTTATAATTCCAGGTCTAACAAAAGCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTATGCCGGAATAACCTTCTCGTACTTAGTTCTGGTACCCGCGGCATTAAATTTCTTTGTCAATTACGCTGAAGGTGCTGTTGAATCACTGTGGTCCATTGATCAATACTTTGAGTTTGTTTTGGTTCTTATGTTCAGCACAGGCTTGTCTTTCCAGGTACCTATAATACAACTTCTATTGGGACAACTTGGATTGGTGTCTGGAGACCGGATGCTATCAGTTTGGAGGTACGTTGTAGTCGGCGCAGTAGTGGCAGCTGCTATAGTTACACCATCGACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCCTTATTAGGTCTTTACCTAGGTGGTGCATGGATGGTTAAACTTTCTGGACGGTAA 1032 0.4273 MGLGTTTVPMNILPQFGLLRTHLTPIRVNNSSGFSFPHSRRKNNSFGKIVCFAVDDELRQNQQQLSTTSSRIGSAIEDRPGEEALENFNEDGERSPIYDFLYPDKELLPDDKEMSLFDHLEELRQRIFVSVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVSGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLSGR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05920 343 Hamap Sec-independent protein translocase protein TatC [tatC]. 111 343 IPR002033 GO:0016020
Trre1g05920 343 ProSitePatterns TatC family signature. 258 277 IPR019820 -
Trre1g05920 343 Pfam Sec-independent protein translocase protein (TatC) 118 326 IPR002033 GO:0016020
Trre1g05920 343 PRINTS Bacterial Sec-independent translocation TatC protein family signature 258 286 IPR002033 GO:0016020
Trre1g05920 343 PRINTS Bacterial Sec-independent translocation TatC protein family signature 189 207 IPR002033 GO:0016020
Trre1g05920 343 PRINTS Bacterial Sec-independent translocation TatC protein family signature 115 142 IPR002033 GO:0016020
Trre1g05920 343 PRINTS Bacterial Sec-independent translocation TatC protein family signature 207 233 IPR002033 GO:0016020
Trre1g05920 343 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC 95 343 IPR002033 GO:0016020
Trre1g05920 343 NCBIfam twin-arginine translocase subunit TatC 116 331 IPR002033 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05920 Trre-Chr1 63602630 63605668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05920 K03118 - gmx:100788116 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05920 1 63602630 63605668 Trre1g05920 1 63602630 63605668 ECH