Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05895 ATGGCCGCGTCGCAGTCTTCTTCCGCCGCGGGAAACACCAACATCATGCTCGCAATCTTTGAGAAGAAAACAAACACCGTAGATCTTTATCGTCCACTCCGCAATTACATCGCCTTTCATTACTCCGAACGCGAAGCACAAAACCTCGAAGACGATCTCCAAACCCTAAAACAACTCCGTTCCGACATCGAACGTCAATCCGATCCATCTCTCCCTGCACGCCGTGACCTTTTCCAAACCTATTTCAAAGCACTATGTCAAGTCGAAACTCGATTTCCAATTTCACCTGAACCTGATCACGTCAACGCACTTACCTTCGTTTGGTTTGATGCATTCAAACCGAAGCTAAAAGCTTCTCAGCAAAATATTCACCTAGAGAAAGGTTCCGTGTTGTTCAATTTGGGCGCTGTTTACAGTCAGATTGGATTGACGTTTGATCGGAATACTGTCGACGGTCGCCGTCAGGCTTCTCATGCCTTTATGGCTGCTGCTGGTTCATTCTCTTATCTTAGAGATAATGCCTCTATGAAAGTCTCCGTTGGAAGTTCCACTACTCTCGATTTGTCTGTTGAGTGTGCGGGCATGTTGGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTCTTTGAGAACACCATCGCAAAAGGAAGCACCCCTGGTGTTTGTGCAAAGATCTCTAGGCAGGTTGGGTTGTATTATGAGGAAGCATTGGCTGCACTGAATGTTGCGCCTTTAAGTCAGCATTTTGATAAGTCTTGGATAGTTCATGTGCAGTTGAAGGCAGCTATATTCTTTGCAGAAGCTTGTTATAGGTATGGATTAGAGCTGCATGAGAAAGAGGAAATAGCAGAGGAGATTGCACGGCTGAAGAGTGCTATTAGTGTGCTTACTGAGTCGAAGAAAAACTCCAAGGGTGCTGCAGCGCAGCTTCTTGATGCAATTAACAAGTTAGAGGTTAATATAAACAGAAACCTTGAAAGGGCTGTCAAGGAGAATGATCGAGTTTATCTGATGAGAGTTCCTCCTACTAGTTCATTGTCACCCCTTCCGGCGTTTGCTATGGTAAAGCCGATGGTCATGAGTGAGGTGCTGGATGCGAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCCGACAATAGTGCCAAGGCCCTCTCTAGGTACACTGAAATGGTTGATGACATTATAAGAACACAGGCCGAGAAGTTGCAGCAAGCTAGTGAGCTAACCCGAGTTAGACTTAAGGAAATGGAATTGCCAGATTCTATTCTTGCTTTGGAAGGGAATTTTACTCTACCGACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAAATCAGTGGGGGCCCTGCTGGTTTGGAATCAGAGTTGCAGCAGCTTAAGGACCTAAGGAGGGTGAATCAAGAACTGCTGGTCCAGACCGAGGAGTTGTTGCAGAAGGAATCAAGAGAAGATGCTCAATTTAGAAGTCAATTTGGCACCAAATGGACTAGGCCTCAGTCAAGCACATTAACAAAGAACTTGTTGGATAGACTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGATAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCACTCATGGCAATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGCTTGGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTTGGGTCTCTCAAACAAAGCTTGAGGCAACTAGAAACTCTGGGAGCTCAAAGGGCTGGTCTCGAAGACATGCTTAGAGAGATGAAAAGAAAGGATGATATATTACCCAAGCTGATGACATCCACCGGTTCTTATGAGGATCTTTTTAAAAAGGAGATAGCAAAATATGACCATATCTCTGAAGAAATAGCTCAAAATATTGAGGCACAAGAGCAACTTTTGCTGCAAATCCAGGCTCAAAATGATGATTTCTCTGTTATCTTCAACCTTGAAGATTACAAATCTTCACGTGAAAAATCCTACAAACAGATTGAAGCTGCCATTGCGAAGTTTCGTGAAATAAAGGACAATATCAATGAAGGGTTAAAATTCTATGTTACCCTACAAGATGCAATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAAAAACACAGGTGGCTATAACAACAACTACCCTTCAGTGGGAAACCAAAATCAAAGATCCAATACACAAACAGATCCTCGTCCACAAGCACCTTATTATCAACAACCTGAGCAGCCACCAGCTCCTGCCTATGGTCAGGCCCCTCCCCCATATGGCTCTGCACATCATCAGCCTCCACCTCCATACCAAATTCCACCAACATCATCTTCTCCGTACCCACCCCCTCAGGTCCATCAGCAGCAGCAGCCTCCACCAAACCATGATTATGGCCAACCTGCGTATCCCGGATGGCGTGGTCCATACTACAATGCACACTCACAACACCCACAACAACAACCTCCTCCTTCTGGTCCTCGACCTCCTTATACCATTCCATCTCCATATCCTCCACCTCACCAAGGTGGCTACTATAAGCAGCAATAG 2628 0.4494 MAASQSSSAAGNTNIMLAIFEKKTNTVDLYRPLRNYIAFHYSEREAQNLEDDLQTLKQLRSDIERQSDPSLPARRDLFQTYFKALCQVETRFPISPEPDHVNALTFVWFDAFKPKLKASQQNIHLEKGSVLFNLGAVYSQIGLTFDRNTVDGRRQASHAFMAAAGSFSYLRDNASMKVSVGSSTTLDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFDKSWIVHVQLKAAIFFAEACYRYGLELHEKEEIAEEIARLKSAISVLTESKKNSKGAAAQLLDAINKLEVNINRNLERAVKENDRVYLMRVPPTSSLSPLPAFAMVKPMVMSEVLDASKEKMFASLVPDNSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLESELQQLKDLRRVNQELLVQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAADSDARIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHISEEIAQNIEAQEQLLLQIQAQNDDFSVIFNLEDYKSSREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNTGGYNNNYPSVGNQNQRSNTQTDPRPQAPYYQQPEQPPAPAYGQAPPPYGSAHHQPPPPYQIPPTSSSPYPPPQVHQQQQPPPNHDYGQPAYPGWRGPYYNAHSQHPQQQPPPSGPRPPYTIPSPYPPPHQGGYYKQQ 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05895 875 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Trre1g05895 875 Gene3D alix/aip1 like domains 423 704 - -
Trre1g05895 875 SMART BRO1_2 15 399 IPR004328 -
Trre1g05895 875 CDD BRO1_Alix_like_1 16 371 - -
Trre1g05895 875 MobiDBLite consensus disorder prediction 735 875 - -
Trre1g05895 875 Coils Coil 279 299 - -
Trre1g05895 875 CDD V_Alix_like_1 377 713 - -
Trre1g05895 875 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Trre1g05895 875 MobiDBLite consensus disorder prediction 846 867 - -
Trre1g05895 875 Coils Coil 307 327 - -
Trre1g05895 875 Coils Coil 39 66 - -
Trre1g05895 875 MobiDBLite consensus disorder prediction 767 816 - -
Trre1g05895 875 PANTHER PCD6 INTERACTING PROTEIN-RELATED 15 869 - -
Trre1g05895 875 Coils Coil 578 598 - -
Trre1g05895 875 MobiDBLite consensus disorder prediction 735 766 - -
Trre1g05895 875 Coils Coil 627 647 - -
Trre1g05895 875 Pfam BRO1-like domain 16 394 IPR004328 -
Trre1g05895 875 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Trre1g05895 875 Coils Coil 451 478 - -
Trre1g05895 875 Gene3D alix/aip1 like domains 12 376 IPR038499 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05895 Trre-Chr1 63474643 63479440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05895 K12200 - gmx:100795465 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05895 1 63474643 63479440 Trre1g05895 1 63474643 63479440 ECH