Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05891 ATGAAGAATTCAGGCGGCGAAGAAGAAAAAGCATTGTCAAGAGCTGCAAAATCAACAGATGAACTTTACCTTCTTCGTGACACTTATTTCCCTCAAAACCCTCACGATAGAATCTCATCATTGCAACAACTTTCCGATCTCATTCTCAATCTCCTCGATTCCGTTCCTCCAGAAGAAAGAAAATCACCTGCGCAACGGGCTATATATGAATATCTTAGAGGGAAAGTATTAGATGTATTTCCTGAATATAAGAAAGAAGCTGAGGATCATCTATCAAAAGCTGTTAAGTTGAACCCGTCTCTTGCTGATGCTTGGCTATGTTTAGGAAATTGTATTTGGAAAAAAGGAGATTTATCTGCAGCAAAAAACTGCCTCAATCTTGCGTTAAACAAGGGTCCTAACAAAAAGATTCTTTGTCAATTATCAATGCTTAAAAGAAGCATGTCTCAAGGTGCGGATAATCAGGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCAATTGCTTTGGATGTCAAGGATGGGAACTCTTGGTATAATCTTGGAAATGCATATCTTACAAGTTTTTTTGTCACTGGAGGTTGGGATCATACCAGACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAGGATGAAGGGATCAAGTCCAATCCAGACTTTTACTTTAACAGTGCCATTGCTAACAAATATCTTGAGAACTACGAGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCAGGTCTAAATGCTACAGGGGAGGTTCAGAAAATTGTCAATTTACTTGACAAGGTGGACAATCTTTTGAGGGTGCATGTAAGAGCTAAGCGAGTCGCCTCTTTGGCAGCATCATTGGCTGTTGTAAATTTGAAATTGTCATACAGAACAGTTACCATAGACCTTCTGTCAGAGGGTCTTAATAGAGCTCTAGCGGTACAGGGGAAGGTGTTATTCTTTATTAGGAGTGATGGTGTTGCTCCTCTATACTATTTGTTGTGTGATTCAAACCAAACTTGCTTTGTTCTCTCAGTTTATGGTGTGCGTCATGATGTGATTAAAGGGGGAGATCAACTCACATTGCTTGATCCTTGTTTTCGTGACGTTGATATTTCCTGGAAGGATAAGCATTACCAGTTCAAATCTATACGCCTGGATTTCTATGAGCAAGTGCTTGTTAATGGAAAAGCTCTGACTCCACAGCAAGCTATTCATACATCGATATATGCACAACATAAACCATGA 1260 0.3968 MKNSGGEEEKALSRAAKSTDELYLLRDTYFPQNPHDRISSLQQLSDLILNLLDSVPPEERKSPAQRAIYEYLRGKVLDVFPEYKKEAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLSAAKNCLNLALNKGPNKKILCQLSMLKRSMSQGADNQAELVDESIQHAKEAIALDVKDGNSWYNLGNAYLTSFFVTGGWDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSAIANKYLENYERALSGFEAAALKDPGLNATGEVQKIVNLLDKVDNLLRVHVRAKRVASLAASLAVVNLKLSYRTVTIDLLSEGLNRALAVQGKVLFFIRSDGVAPLYYLLCDSNQTCFVLSVYGVRHDVIKGGDQLTLLDPCFRDVDISWKDKHYQFKSIRLDFYEQVLVNGKALTPQQAIHTSIYAQHKP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05891 419 SMART tpr_5 222 255 IPR019734 GO:0005515
Trre1g05891 419 SMART tpr_5 67 101 IPR019734 GO:0005515
Trre1g05891 419 SMART tpr_5 102 135 IPR019734 GO:0005515
Trre1g05891 419 Gene3D - 279 418 IPR038645 -
Trre1g05891 419 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 42 396 - -
Trre1g05891 419 SUPERFAMILY TPR-like 83 246 IPR011990 GO:0005515
Trre1g05891 419 Gene3D Tetratricopeptide repeat domain 4 278 IPR011990 GO:0005515
Trre1g05891 419 Pfam Tetratricopeptide repeat protein 5 OB fold domain 300 410 IPR032076 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05891 Trre-Chr1 63454483 63465817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05891 K24928 - gmx:100794928 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05891 1 63454483 63465817 Trre1g05891 1 63454483 63465817 ECH