Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05874 ATGGCCATTCCTTGCCCCCATTTCATCTCCTCCGCAAAAGCCGCCATGGAAGCCGGTCTCCTCATACCTTCCTCACCTTCTTCATCCGTCTCCGTTATCCTCACCCAAGACGATTTGAAGAAAATCGCCGCATACAAAGCTGTTGAATACGTCGAATCCGGCATGGTTCTCGGTCTCGGAACCGGTTCAACTGCCAAACACGCCGTCGACCGAATCGGAGAGCTTCTCCGTCAAGGAAAACTCACAAACATCATTGGTATACCAACTTCAACGAAAACTCATGAACAAGCTGTTTCGTTAGGGATTCCTCTTTCGGATCTAGATTCTCACCCTGTCGTTGATCTTGCTATCGATGGTGCTGATGAAGTTGATCCTTATCTGAATTTAGTGAAAGGACGTGGTGGTTCACTTTTGAGAGAAAAAATGGTGGAAGGTGCATGTAAGAAATTTGTTTGTATTGTTGATGAATCAAAATTGGTTAATTATTTAGGTGGTAGCGGTTTAGCTATGCCTGTTGAAGTTATTAGGTTTTGTTGGAAATTTACTGCTGGTAAGCTTCAGAATCTGTTTGATGAATCTGGTTGTGTTGCAAAGCTTAGAACTTTTGGTGAAAATCAAGAACCTTATGTTACTGATAATGGGAATTATATTGTTGATTTGTATTTTGAAAAGAGTATTGGTGATTTGAAAGTTGCAAGTGATGCAATTCTGAATATTGCTGGTGTTGTTGAGCATGGAATGTTTTTGGATATGGCTACTACTGTTATTGTTGCAGGTGAACTCGGGTTAACGGTGAAGAATAAGTAG 807 0.4139 MAIPCPHFISSAKAAMEAGLLIPSSPSSSVSVILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIIGIPTSTKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVCIVDESKLVNYLGGSGLAMPVEVIRFCWKFTAGKLQNLFDESGCVAKLRTFGENQEPYVTDNGNYIVDLYFEKSIGDLKVASDAILNIAGVVEHGMFLDMATTVIVAGELGLTVKNK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05874 268 FunFam Ribose-5-phosphate isomerase A 39 173 - -
Trre1g05874 268 Hamap Ribose-5-phosphate isomerase A [rpiA]. 36 266 IPR020672 GO:0004751|GO:0009052
Trre1g05874 268 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 86 260 IPR004788 GO:0004751|GO:0009052
Trre1g05874 268 CDD RPI_A 39 259 IPR004788 GO:0004751|GO:0009052
Trre1g05874 268 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 168 249 - -
Trre1g05874 268 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 24 267 - -
Trre1g05874 268 NCBIfam ribose 5-phosphate isomerase A 39 262 IPR004788 GO:0004751|GO:0009052
Trre1g05874 268 Gene3D - 39 260 - -
Trre1g05874 268 Gene3D - 162 246 - -
Trre1g05874 268 SUPERFAMILY NagB/RpiA/CoA transferase-like 35 219 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05874 Trre-Chr1 63354494 63355300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05874 K01807 - gmx:100795150 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05874 1 63354494 63355300 Trre1g05874 1 63354494 63355300 ECH