Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05794 ATGGCCATCGATATCCTAACCTTAGAAAACAGGTATATTGATTCTTGCAGGAGACATGGTGTTTTACCTAATGCTGCTATTTTGTCAAGCTTTTTCAAGGCTGAGGTCAAAAAATCCAACCAAGAGCCATGCATCCTGGACATTTTAATTGACGACCTTAAGGATGTTGATTTTGCTCCACTCTTCGAGATATGCACGAACCTTGATACTTCTGAAATAGAAGCTGTTGATATACGTAACGAATCACCATGTGTATTAAGTCAAGAATATGCATTACCGTTGATGCGTGCTATTAAACAAAAGCTTCGAGTAGTTGAACTACATGATGTGTCAATTACAAATGACTTCGTACGGGATATCTCAGAAAGAGGTTTGGCATGCCAAGTTTTGACATCAAGGTCTTGGCATTTCCGGAAGTTGGGCTTGATGGGGGAGTTCAGGCATATGCACACACTTAATCTTGATTTCAGTTCTTGCCTTGCCAGTTTTGAAGAAGACTGCTTTAATTGCATGCCCAATCTAATGTCTCTCTCAATGTGTGAAACAATGGTTGCAAATCTTTGGTCAACTGTTGCAGCACTCTCAAAGCTTCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAGTATTGTAATGATACGGGAACATCTTTTACCTCATCCAGTGGGAAATCAGATGGCACTGCTGATTTTAGTTTACTTGATAGAGTTCCTTTTATTGGTGAATTCAGCATTGATGATACAAGGGAACTAACAGATCTTAACATTAGTGTCGAGGATCCACTTAGAAATTTTTATTCCTTTGATGAAGAAGTTATGAGTCATGATGCTCAAAGCATGGTTGAAGACTCATCAGGTGATAGTGAAATTGATTTGACAAATCATCATCATAGAAACTGGTTGTTAGATGTTTTTCCTAGGTGGAGTTTACAAATGCCTCTTCAGAGCGAGAATGAAGAGTCATCAAGAGGTTCCTTTACAGGGAATGGTATTGATGTTTCCATGAAGTATATGTCTTGTCATGCATCACCAATATGTAAGGAAAAACATTACAGAGAATTCATGATAGCTTCATTACCTAATCTGAAAAGTTTAGATAATCTGCCTATCAGAAATATTGACAGGGAAAGGGCTACTGGAATATTTTATCAATACTTTGAATATCTTCCATACAGATGGAAGAGCAAAGAGAGTGTTTTAAGTATTTTGCACAAGCGAGAAATAAAATCAGGCCACATTAAGGTGCAATCATCAAAGCGTAGCCCCTCACATCCTCATGGAACATCTCAACATTTTTATACTAGGTCTCTTTCTGCTGCTAAACTGGGGTCTTCAACTTGGCCATTCTTACATCCCCTTTCCCTATCAGGATTTGAATTGGATAATGGCTTTCGTCCAAGGCAGTTTGAATATCACCCATCTGACTCCAGTTTGATGGTCTTTGGAACTCTAGATGGTGAAGTAGTTGTCATCAATCATGAGAGTGAACGTATTGTGAGTTATATCCCATCACTTGGCGCAATGAATAGTGTCTTGGGTCTTTGTTGGCTCAAGAAATATCCTTCTAAGCTTATAGCAGGTTCAGATAACGGTTCCCTGAAATTCCTGACATCTGTTCATGTTAACTCTACGGATGAACTATTTCTTGCAAGTGGTTACTCCAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAGCGCTTACAAGTGTTCACAGATATGCATCATGGGCATATTAATGTAGTCAAGTTTGCAAATCATTCCCCGTCAATTTTTGCTACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATAAACCCTTGCTTCACTTCTTCAAGCTCTAAAGGAAATGTGATGGTTTGTTTTTCTCCAGATGACCAATATATCCTGGCATCGGCAGTCGATAATGAGGTTAGACAATTTTTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCAAAGAAAGGTTGTCAAAATTATACTCGTTCTTATTACATGAATGGGAGGGACTACATTATAAGTGGAAGTTGTGATGAACACATTGTCCGTATTTGTTGTGCTCAAACAGGGAGGCGCCTTAGAGATATTTCCCTTGAGGGTAAAAGCTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGAGGCGATCCTTTTAGGGATTTCAATATGAGTGTGTTAGCAGCCTACATGCGGCCTGGCTCCAAGTCTGAAATTGTCAAGATTAATTTACTAGCATCTAGTGACCATTCCAAGGGTGACTATGATGCCGATCCTGTATGCCCATCCCACATCATGGGAGCTTGA 2328 0.3926 MAIDILTLENRYIDSCRRHGVLPNAAILSSFFKAEVKKSNQEPCILDILIDDLKDVDFAPLFEICTNLDTSEIEAVDIRNESPCVLSQEYALPLMRAIKQKLRVVELHDVSITNDFVRDISERGLACQVLTSRSWHFRKLGLMGEFRHMHTLNLDFSSCLASFEEDCFNCMPNLMSLSMCETMVANLWSTVAALSKLPSLVELRFQYWQYCNDTGTSFTSSSGKSDGTADFSLLDRVPFIGEFSIDDTRELTDLNISVEDPLRNFYSFDEEVMSHDAQSMVEDSSGDSEIDLTNHHHRNWLLDVFPRWSLQMPLQSENEESSRGSFTGNGIDVSMKYMSCHASPICKEKHYREFMIASLPNLKSLDNLPIRNIDRERATGIFYQYFEYLPYRWKSKESVLSILHKREIKSGHIKVQSSKRSPSHPHGTSQHFYTRSLSAAKLGSSTWPFLHPLSLSGFELDNGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHESERIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKFLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHHGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPINPCFTSSSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPKKGCQNYTRSYYMNGRDYIISGSCDEHIVRICCAQTGRRLRDISLEGKSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIVKINLLASSDHSKGDYDADPVCPSHIMGA 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05794 775 SMART LRRcap_2 348 366 IPR003603 -
Trre1g05794 775 PANTHER BNAC09G30780D PROTEIN 2 535 IPR046377 GO:0071493|GO:0080008
Trre1g05794 775 SUPERFAMILY RNI-like 91 363 - -
Trre1g05794 775 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 607 IPR001680 GO:0005515
Trre1g05794 775 Gene3D Ribonuclease Inhibitor 326 386 IPR032675 -
Trre1g05794 775 Gene3D - 463 723 IPR015943 GO:0005515
Trre1g05794 775 SMART WD40_4 518 561 IPR001680 GO:0005515
Trre1g05794 775 SMART WD40_4 610 648 IPR001680 GO:0005515
Trre1g05794 775 SMART WD40_4 564 605 IPR001680 GO:0005515
Trre1g05794 775 SUPERFAMILY WD40 repeat-like 465 705 IPR036322 GO:0005515
Trre1g05794 775 Pfam WD domain, G-beta repeat 571 605 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05794 Trre-Chr1 62782551 62789733 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05794 - - gmx:100806443 1225.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05794 1 62782551 62789733 Trre1g05794 1 62782551 62789733 ECH