Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05773 ATGTCATCTTCTCTCTCACCACCATCACTTTCTTCTCCTTTCATCCACGATTCTTCAACTTTTCGCCATGGAACCAAGCTTTTTCATCTTCCTCACTCTACTTCCACACGCAAACCTCGATGCTTCAAATCTTTCTCTTCAAAGTGCTCCCTCGACAACATCCCCAAGCAGTTCAGACAGGAAAATCTCAAGGATGGATTGATGGACAACTACAAGAATACACCTCAGTTTCTGTACGGTCTTACTCCTTCGCAAATGGACATGTTCGTAAATGCAGACAATCCTATGCACAAGGCGTCCGGAAAAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGAGAATAGTGGGATGGGTAGCATATCTAGCATGGATACTAATGCCTCTTCAAGGCACAGCATGAGTGTTAGTATGTATAGAGGAGGAGGTAGGGGGGGAAGGCCTAGAAGAGCTCCACCGGATTTGCCTTCTCTGCTCTTGGACGCTCGAATATGTTTTCTGGGTATGCCGATTGTACCAGCTGTGACAGAACTTATTCTGGCTCAACTTATGTGGTTGGATTATGATAACCCTGCCAAACCTATTTATTTATATATTAATTCGTCTGGGACTCAGAATGAGAAGAAGGAGAACGTGGGATCAGAAACTGATGCTTATTGCATAGCTGATATGATTTCTTATATCAAATCTGATGTCTATACTATCAATTTGGCAATGGCGTTTGGCCAAGCAGCAATGCTTTTGGCTATCGGGAAAAAGGGTTATCGTGCTGTACTACCAAACTCATCCACAAAAGTATATCTCCCGAAATGCCACAGATCAAGCGGTTCTGTTGCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAGTTCTGAGCATTACATTGATTTGCTGGCAAAAGGAATAGGGAAACCAAGGGATGAAATTGCTCAAGAAGTCCAGAGGACTAGATTTTTCCAAGCACAGGAAGCCGTAGACTTCGGAATCGCAGACAAAATAATGGACTTCGGGGAAGATGCATTTGAGAAGCGGGATTATAATGCAATGCGTGCTGCAAGAGCACTCAAGAGAAGTGGCGGGAGCCCTCAAGCGTCTCCTTCAGGACTTTAG 1119 0.4397 MSSSLSPPSLSSPFIHDSSTFRHGTKLFHLPHSTSTRKPRCFKSFSSKCSLDNIPKQFRQENLKDGLMDNYKNTPQFLYGLTPSQMDMFVNADNPMHKASGKVTEESISSAKSYLENSGMGSISSMDTNASSRHSMSVSMYRGGGRGGRPRRAPPDLPSLLLDARICFLGMPIVPAVTELILAQLMWLDYDNPAKPIYLYINSSGTQNEKKENVGSETDAYCIADMISYIKSDVYTINLAMAFGQAAMLLAIGKKGYRAVLPNSSTKVYLPKCHRSSGSVADMWIKAKELEASSEHYIDLLAKGIGKPRDEIAQEVQRTRFFQAQEAVDFGIADKIMDFGEDAFEKRDYNAMRAARALKRSGGSPQASPSGL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05773 372 Gene3D - 130 340 - -
Trre1g05773 372 SUPERFAMILY ClpP/crotonase 152 340 IPR029045 -
Trre1g05773 372 CDD S14_ClpP_2 156 336 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 96 340 IPR023562 -
Trre1g05773 372 PRINTS Clp protease catalytic subunit P signature 156 171 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 PRINTS Clp protease catalytic subunit P signature 315 334 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 PRINTS Clp protease catalytic subunit P signature 257 276 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 PRINTS Clp protease catalytic subunit P signature 196 216 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 PRINTS Clp protease catalytic subunit P signature 236 253 IPR001907 GO:0004176|GO:0004252|GO:0006508
Trre1g05773 372 Pfam Clp protease 158 338 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05773 Trre-Chr1 62597841 62601223 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05773 K01358 - gmx:100820008 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05773 1 62597841 62601223 Trre1g05773 1 62597841 62601223 ECH