Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05763 ATGAAAGAACCTCAAAGGGCACAATATGGAGGGGGCATTATAGTAAATTCAGGATTTGAACACAACATAGAAGGTTGGACAGTGTTTGGAAATGGAACAATTGAAGAACGTATATCAAATGATGGAAATAGATTCATTGTTGTTAGAAACAGAACACAAACATTAGATAGTTTTTCACAAAAAGTTCAACTCAAGAAAGGTTTGATTTACATGTTTTCAGCTTGGCTTCAACTGAATGAAGGGAGTGACATGGTGTCAGTTGTGTTTAAAACAAATGGAAGTGAATTGATACATGGTGGTCATGTGATAGCAAAGCATGGATGTTGGTCTTTTCTAAAAGGCGGCATAGTCGCAAACTTCTCAACCCCCGCTGAAATTCTTTTCGAGAGCAATAATCCAAGTGTGGAAATATGGGCTGATAGTGTCTCCTTGCAACCATTTACAAAAGTGGAATGGAGATCACACCAAGACAACAACATTGAAAAGGTACGTAAGAGCAAGGTTAGATTCCATGTAACTCATGTAAATGAAATATCATTGGAAGGAGCAACAATTATCATAAAACAAACAAAATCAGATTTTCCATTTGGATGTGGTATAAACCATCATATTCTCACAAATAATGATTACCAAAAATGGTTTGTGTCAAGATTTAAATACACAACTTTCACCAATGAAATGAAATGGTATAGTACAGAGAAAATTCAAGGAAAAGAAAATTACACTATTGCAGATGGAATGTTACTATTCACAAAACAAAATGGAATTTCTGTGAGAGGTCACAACATTTTTTGGGATGATCCAAAATACCAACCTGAATGGGTAAAAACCTTATCACCGGACGAATTGCGTGAAGCCGCGGAAAAAAGAATTAAATCTGTTGTTACAAGATATAAAGGAGACTTGATTGCATGGGATGTGATGAATGAGAATCTACATTTCCACTTCTATGAAGATAAACTTGGTAAAAATGCATCTGAATCATACTATTTAAAAGCTCATGAGGTTGATTCAAAAACAACAAAGTTTATGAATGAGTATAATACTATTGAATATAGTGGTGATAAAGTTGCTAGCCCAACAAACTATTACAAAAAAATTAATGAGATTTTGCAATCTGGAGAAGCTACTGAAATGTCATTTGCCATTGGGTTGCAATGTCATTTTGCAAGTGGTCAACCAAATCTTGCTTACATGAGGTCAGGTTTAGATTTTCTTGGTGAAATTGGATTTCCAATATGGCTCACAGAAACTAGTGTGGATCCTCAGCCACAACAGGCAGAGTATTTTGAAGCTATACTAAGAGAAGGTTACTCTCATAGAGCTGTTGAAGGGGGGATAGGGATTATAATGTTTGCTGGTCCAGCACAAGCTGGTTTCAACACTACACTCCTTGCAAATGCAAATTTCCAAACAACTCCAACTGGACAAGTTGTGGATAACTTGATATATGAGTGGGGAACTGGACCTAAAACAGCCATAGCAGATAGTAGAGGAGTTGTAGATATTTCATTGCATCATGGAGATTATGATGTTATTGTTACATACCCTTTAACTCAATACTCCAAAAAATTGAATATAAGTGTTAGGAAAGGATTTTCACATGAAAACATTCATGTGAAAATGCATGCCTAA 1635 0.3554 MKEPQRAQYGGGIIVNSGFEHNIEGWTVFGNGTIEERISNDGNRFIVVRNRTQTLDSFSQKVQLKKGLIYMFSAWLQLNEGSDMVSVVFKTNGSELIHGGHVIAKHGCWSFLKGGIVANFSTPAEILFESNNPSVEIWADSVSLQPFTKVEWRSHQDNNIEKVRKSKVRFHVTHVNEISLEGATIIIKQTKSDFPFGCGINHHILTNNDYQKWFVSRFKYTTFTNEMKWYSTEKIQGKENYTIADGMLLFTKQNGISVRGHNIFWDDPKYQPEWVKTLSPDELREAAEKRIKSVVTRYKGDLIAWDVMNENLHFHFYEDKLGKNASESYYLKAHEVDSKTTKFMNEYNTIEYSGDKVASPTNYYKKINEILQSGEATEMSFAIGLQCHFASGQPNLAYMRSGLDFLGEIGFPIWLTETSVDPQPQQAEYFEAILREGYSHRAVEGGIGIIMFAGPAQAGFNTTLLANANFQTTPTGQVVDNLIYEWGTGPKTAIADSRGVVDISLHHGDYDVIVTYPLTQYSKKLNISVRKGFSHENIHVKMHA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05763 544 PANTHER GLYCOSYL HYDROLASE 2 531 IPR044846 GO:0004553|GO:0005975
Trre1g05763 544 SMART glyco_10 227 483 IPR001000 GO:0004553|GO:0005975
Trre1g05763 544 SUPERFAMILY Galactose-binding domain-like 10 147 IPR008979 -
Trre1g05763 544 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 180 482 IPR001000 GO:0004553|GO:0005975
Trre1g05763 544 Pfam Glycosyl hydrolase family 10 190 427 IPR001000 GO:0004553|GO:0005975
Trre1g05763 544 Gene3D - 1 150 - -
Trre1g05763 544 Gene3D Glycosidases 183 487 - -
Trre1g05763 544 SUPERFAMILY (Trans)glycosidases 181 489 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05763 Trre-Chr1 62517407 62521683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05763 1 529 Glycoside Hydrolase AT4G33840 49.248 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05763 - - gmx:100802367 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05763 1 62517407 62521683 Trre1g05763 1 62517407 62521683 ECH