Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05762 ATGAAGGATGCAGCAAAATGTTGCAATTTGTTATTCACCACAACCTCTTTCCTTTTACTTATCTCAGGGCTAGGTGTTCATTCTTTGGATTATGATTATTCTGCAACTATTGAGTGTATGAAAGAACCTCAAAGGGCACAATATGGAGGGGGCATTATAGTAAATTCAGGATTTGAACACAACATAGAAGGTTGGACAGTGTTTGGAAATGGAACAATTGAAGAACGTATATCAAATGATGGAAATAGATTCATTGTTGTTAGAAACAGAACACAAACATTAGATAGTTTTTCACAAAAAGTTCAACTCAAGAAAGGTTTGATTTACATGTTTTCAGCTTGGCTTCAACTGAATGAAGGGAGTGACATGGTGTCAGTTGTGTTTAAAACAAATGGAAGTGAATTGATACATGGTGGTCATGTGATAGCAAAGCATGGATGTTGGTCTTTTCTAAAAGGCGGCATAGTCGCAAACTTCTCAACCCCCGCTGAAATTCTTTTCGAGAGCAATAATCCAAGTGTGGAAATATGGGCTGATAGTGTCTCCTTGCAACCATTTACAAAAGTGGAATGGAGATCACACCAAGACAACAACATTGAAAAGGTACGTAAGAGCAAGGTTAGATTCCATGTAACTCATGTAAATGAAATATCATTGGAAGGAGCAACAATTATCATAAAACAAACAAAATCAGATTTTCCATTTGGATGTGGTATAAACCATCATATTCTCACAAATAATGATTACCAAAAATGGTTTGTGTCAAGATTTAAATACACAACTTTCACCAATGAAATGAAATGGTATAGTACAGAGAAAATTCAAGGAAAAGAAAATTACACTATTGCAGATGGAATGTTACTATTCACAAAACAAAATGGAATTTCTGTGAGAGGTCACAACATTTTTTGGGATGATCCAAAATACCAACCTGAATGGGTAAAAACCTTATCACCGGACGAATTGCGTGAAGCCGCGGAAAAAAGAATTAAATCTGTTGTTACAAGATATAAAGGAGACTTGATTGCATGGGATGTGATGAATGAGAATCTACATTTCCACTTCTATGAAGATAAACTTGGTAAAAATGCATCTGAATCATACTATTTAAAAGCTCATGAGGTTGATTCAAAAACAACAAAGTTTATGAATGAGTATAATACTATTGAATATAGTGGTGATAAAGTTGCTAGCCCAACAAACTATTACAAAAAAATTAATGAGATTTTGCAATCTGGAGAAGCTACTGAAATGTCATTTGCCATTGGGTTGCAATGTCATTTTGCAAGTGGTCAACCAAATCTTGCTTACATGAGGTCAGGTTTAGATTTTCTTGGTGAAATTGGATTTCCAATATGGCTCACAGAAACTAGTGTGGATCCTCAGCCACAACAGGCAGAGTATTTTGAAGCTATACTAAGAGAAGGTTACTCTCATAGAGCTGTTGAAGGGGGGATAGGGATTATAATGTTTGCTGGTCCAGCACAAGCTGGTTTCAACACTACACTCCTTGCAAATGCAAATTTCCAAACAACTCCAACTGGACAAGTTGTGGATAACTTGATATATGAGTGGGGAACTGGACCTAAAACAGCCATAGCAGATAGTAGAGGAGTTGTAGATATTTCATTGCATCATGGAGATTATGATGTTATTGTTACATACCCTTTAACTCAATACTCCAAAAAATTGAATATAAGTGTTAGGAAAGGATTTTCACATGAAAACATTCATGTGAAAATGCATGCCTAA 1752 0.3556 MKDAAKCCNLLFTTTSFLLLISGLGVHSLDYDYSATIECMKEPQRAQYGGGIIVNSGFEHNIEGWTVFGNGTIEERISNDGNRFIVVRNRTQTLDSFSQKVQLKKGLIYMFSAWLQLNEGSDMVSVVFKTNGSELIHGGHVIAKHGCWSFLKGGIVANFSTPAEILFESNNPSVEIWADSVSLQPFTKVEWRSHQDNNIEKVRKSKVRFHVTHVNEISLEGATIIIKQTKSDFPFGCGINHHILTNNDYQKWFVSRFKYTTFTNEMKWYSTEKIQGKENYTIADGMLLFTKQNGISVRGHNIFWDDPKYQPEWVKTLSPDELREAAEKRIKSVVTRYKGDLIAWDVMNENLHFHFYEDKLGKNASESYYLKAHEVDSKTTKFMNEYNTIEYSGDKVASPTNYYKKINEILQSGEATEMSFAIGLQCHFASGQPNLAYMRSGLDFLGEIGFPIWLTETSVDPQPQQAEYFEAILREGYSHRAVEGGIGIIMFAGPAQAGFNTTLLANANFQTTPTGQVVDNLIYEWGTGPKTAIADSRGVVDISLHHGDYDVIVTYPLTQYSKKLNISVRKGFSHENIHVKMHA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05762 583 Pfam Glycosyl hydrolase family 10 229 466 IPR001000 GO:0004553|GO:0005975
Trre1g05762 583 SUPERFAMILY Galactose-binding domain-like 49 186 IPR008979 -
Trre1g05762 583 SUPERFAMILY (Trans)glycosidases 220 528 IPR017853 -
Trre1g05762 583 Gene3D - 40 189 - -
Trre1g05762 583 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 219 521 IPR001000 GO:0004553|GO:0005975
Trre1g05762 583 Gene3D Glycosidases 222 526 - -
Trre1g05762 583 SMART glyco_10 266 522 IPR001000 GO:0004553|GO:0005975
Trre1g05762 583 PANTHER GLYCOSYL HYDROLASE 29 570 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05762 Trre-Chr1 62517407 62522016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05762 27 568 Glycoside Hydrolase AT4G33840 49.908 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05762 - - gmx:100777980 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05762 1 62517407 62522016 Trre1g05762 1 62517407 62522016 ECH