Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05759 ATGAAGGTTGCAGCCGAATTATCCATTTTTTTGTTCACCACATCTTACTTTGTTCTCATTTTAGGGATCCAACTTCATTCTATACCTTATGATTATTTTGCTACTATGGAGTGTGTGAAAGAACCTAAGAGGGCACAATATGGAGGTGGCATTATAGTAAATCCAGAATTCGATCACAAGATAAAAGGTTGGACAGTGTTTGGAAATGGAACAATCGAGGAACGAAAATCAAATGATGGAAATACATTCATTGTTGCAAGCAATAGAACACAATCATTGGATAGTTTTTCACAAAAGGTCCAACTGAAGAAAGGAATAATATATACATTTTCTGCTTGGTTTCAGCTTAGTGAAGGAAGTGATATTGTGTCAGTTGTATTTAAAATAAATGGTAGTGAATTGGTACGAGGTGGCCATGTTATAGCAAAGCATGGATGCTGGTCTTTTCTAAAAGGTGGCATAGTTGCAAATTTTTCAAGCCCTGCTGAGATTCTTTTTGAGAGTGAGAATCCAACTGTGGAGTTATGGGCTGATAGTGTTTCCTTACAACCATTCACCATAGAGCAATGGAGATCACACCAAGACAATAACATTGAGAAGGTGCGTAAGAGTAAGGTGAGATTTCAGGTAACTCATCTAAACGAAACAACATTGGATGGAGCGAAAATCGTCATAAAACAAACAAAGCCAAATTTCCCATTTGGATGTGCGATGAATAGTCACATCCTCACAAACATTGAGTACCAGAAATGGTTTGTGGCAAGATTCAAATACACAACTTTCACTAACGAGATGAAGTGGTATAGTACAGAGAAAATTCAAGGCCAGGAAAACTATACTATCCCAGATGCCATGTTGAAATTCGCCAAAGAAAATGGCATTTCTGTCAGAGGTCATACCATTTTGTGGGACTGCATAAATTTACAGCCTCAATGGGTTAAGTCACTACCTCCTAACGAATTACGAGAAGCAGCTACAAAAAGAACGAACTCAGTGGTTTCAAGATATAATGGACAACTGATTGCATGGGATGTTGTGAATGAGAATCTCAACTGCCGCTTTTATGAATACAAACTTGGCGAAAATGCCTCTGCAGAATATTATTCAATAGCTTACCATCTTGATCCAAACACTACCATGTTCATGAATGAATATAACACCATTGAATACAGTGGAGATCAGTTTTCCAGCCCGTTCAATTACCTCAGGAAACTTAAGGAGATTCAGTATTATCCAGGAACTGCTGGAATGCCAATGGCCATAGGGTTGGAAGGCCATTTTGCAAGGGGCTTCCCAAATCTCGCGTACATGAGATCCGGTCTAGATTCTCTTGGTGCAACTGGACTTCCTATATGGCTCACAGAAACCAGTGTGGTTCCTCAGCCAAATCAGGCACAGTACCTTGAAGTGGTACTAAGAGAGGCATACTCTCATCCAGCTGTTCAAGGGATTATAATGTTTGTAGGTCCAGCACAAGCCGGTTTCGCCAATACACTCCTCGCAGATGAAAATTTTCAAAATACTCCAAGCGGAGACGTTGTGGACAAGCTAATTAATGAGTGGGGAACCGGACCTAAAATAGGCATATCAGATAGTAATGGAATTGTGGATATTTCATTACATCATGGAGATTATGATGTTACTGTTACACACCCTTTAACTCAATACTCCAAAAAATTGAATGTTAGAGTAAGGAAAGGATTTTCACAAGAAAACATTCATGTGAAAATGCATGCCTAA 1740 0.3908 MKVAAELSIFLFTTSYFVLILGIQLHSIPYDYFATMECVKEPKRAQYGGGIIVNPEFDHKIKGWTVFGNGTIEERKSNDGNTFIVASNRTQSLDSFSQKVQLKKGIIYTFSAWFQLSEGSDIVSVVFKINGSELVRGGHVIAKHGCWSFLKGGIVANFSSPAEILFESENPTVELWADSVSLQPFTIEQWRSHQDNNIEKVRKSKVRFQVTHLNETTLDGAKIVIKQTKPNFPFGCAMNSHILTNIEYQKWFVARFKYTTFTNEMKWYSTEKIQGQENYTIPDAMLKFAKENGISVRGHTILWDCINLQPQWVKSLPPNELREAATKRTNSVVSRYNGQLIAWDVVNENLNCRFYEYKLGENASAEYYSIAYHLDPNTTMFMNEYNTIEYSGDQFSSPFNYLRKLKEIQYYPGTAGMPMAIGLEGHFARGFPNLAYMRSGLDSLGATGLPIWLTETSVVPQPNQAQYLEVVLREAYSHPAVQGIIMFVGPAQAGFANTLLADENFQNTPSGDVVDKLINEWGTGPKIGISDSNGIVDISLHHGDYDVTVTHPLTQYSKKLNVRVRKGFSQENIHVKMHA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05759 579 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 219 517 IPR001000 GO:0004553|GO:0005975
Trre1g05759 579 Gene3D Glycosidases 222 524 - -
Trre1g05759 579 SUPERFAMILY (Trans)glycosidases 219 524 IPR017853 -
Trre1g05759 579 Pfam Glycosyl hydrolase family 10 228 464 IPR001000 GO:0004553|GO:0005975
Trre1g05759 579 SMART glyco_10 265 517 IPR001000 GO:0004553|GO:0005975
Trre1g05759 579 Gene3D - 39 188 - -
Trre1g05759 579 Pfam Carbohydrate binding domain 50 129 IPR003305 GO:0016798
Trre1g05759 579 SUPERFAMILY Galactose-binding domain-like 48 183 IPR008979 -
Trre1g05759 579 PANTHER GLYCOSYL HYDROLASE 29 566 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05759 Trre-Chr1 62498184 62501453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05759 26 561 Glycoside Hydrolase AT4G33840 53.247 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05759 - - gmx:100802367 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05759 1 62498184 62501453 Trre1g05759 1 62498184 62501453 ECH