Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05754 ATGGTAGCTGGTGGCGGTGGAGGAGGAAAAGTTGATGAGTTTCAACCTCATCCTGTAAAGGAACAACTTCCTGGTGTTGATTACTGCATTAGAAGCTCACCTTCATGGCCTGAAGGGATTTTTCTTGGGTTTCAACACTATCTTGTCATGCTGGGAAGCATTGTGATCATTTCTACTATACTTGTTCCTTTGATGGGTGGTGGAAATGTGGAAAAAGCTCAAATGATCCAGACAATGCTTTTTGTTGCTGGTATAAAAACATTGTTGCAAACTTTGGTTGGTACTAGACTTCCTGTGGTTATAGGTCCTTCCTTTGCTTTCCTTATACCAGCTATATCTGTTGCTTTCTCAACTAGAATGAGCACATTCCTCAATCCTAATCAGAGGTTCAAGCAATCCATTAGAGCTGTACAAGGTGCTTTGATAATTGCTTCTTTTGTTCAAGCCCTGATTGGGTTTTTCGGGATCTGGAGTATTTTTGCAAGGTTTCTCAGCCCTCTAAGCATCGTTCCCCTCGTCACTCTGACTGGCTTAGGACTCTTTGTATTATGGTTTCCAAGATTGGCTGATTGTGTTGAAATTGGTCTCCCTGCATTGGTCATTCTGGTCATCTTATCCCAATACATTCCACAAAAGATGAAATCAAGAGGATTCGATCGAGTTGCAATAGTAGTCACAATTGGAATTGCATGGGCATTTGCTGAAATTTTGACTGCAGCTGGTGCATATAATAAAAGACCACCGATGACTCAAATCAACTGCCGTACTGACCGTTCTGGGTTGATTACTGCCGCTTCTTGGATAAAAGTTCCATATCCATTGCAATGGGGAGGTCCTACTTTCAATGCTGGTGATATATTTGCAATGATTGCTGCTTCAATTGTTGCTATTGTAGAGTCAACCGGGACATTCATTGCGGCATCGAGGTTTGGGAGTGCAACACCAGTTCCACCTTCTGTGCTTAGCCGCGGTGTTGGCTGGCTGGGTGTAGGCACTCTTCTGGATGGCCTTTTTGGCGCAGCCACTGGATCTGCTGCATCAGTCCAAAATGCAGGACTGTTGGGTCTAACACGCGTTGGGAGTCGAAGAGTCATTCAAATATCAGCTGGATTCATGTTTTTCTTCTCCATATTTGGCAAATTTGGAGCAGTGATTGCTGCAATACCATTGCCAATAATAGCAGCTGTATATTGTGTCCTCTTTGCTTATGTCGCATCAGCTGGACTTGGTTTTCTTCAATTCTGCAATCTCAACAGCTATAGATCAATGTTCATCGTCGGCTTTTCTCTCTTCCTCGGTCTATCCATTCCGCAATATTTCAATCAATCTATCGTTCTATCTGGACTCAGCCCTGTTCAAACCGGATCCACCTCGTTCAACAATATAGTGCAAGTGATTTTCTCATCTCCAGCAACTGTAGCTATTATAGTTGCTTACTTCTTGGATACCACTATGAGTCCTGCACATGCCTCAACTCGCAGAGACAGTGGGAGACACTGGTGGGAAAAATTCAGGAGCTACAATCAGGATATCAGAAGTGACGAGTTCTATGCATTGCCTATGAGACTTAACAGATTTTTCCCTTCATACTGA 1593 0.4325 MVAGGGGGGKVDEFQPHPVKEQLPGVDYCIRSSPSWPEGIFLGFQHYLVMLGSIVIISTILVPLMGGGNVEKAQMIQTMLFVAGIKTLLQTLVGTRLPVVIGPSFAFLIPAISVAFSTRMSTFLNPNQRFKQSIRAVQGALIIASFVQALIGFFGIWSIFARFLSPLSIVPLVTLTGLGLFVLWFPRLADCVEIGLPALVILVILSQYIPQKMKSRGFDRVAIVVTIGIAWAFAEILTAAGAYNKRPPMTQINCRTDRSGLITAASWIKVPYPLQWGGPTFNAGDIFAMIAASIVAIVESTGTFIAASRFGSATPVPPSVLSRGVGWLGVGTLLDGLFGAATGSAASVQNAGLLGLTRVGSRRVIQISAGFMFFFSIFGKFGAVIAAIPLPIIAAVYCVLFAYVASAGLGFLQFCNLNSYRSMFIVGFSLFLGLSIPQYFNQSIVLSGLSPVQTGSTSFNNIVQVIFSSPATVAIIVAYFLDTTMSPAHASTRRDSGRHWWEKFRSYNQDIRSDEFYALPMRLNRFFPSY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05754 530 Pfam Permease family 40 440 IPR006043 GO:0016020|GO:0022857|GO:0055085
Trre1g05754 530 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 12 528 - -
Trre1g05754 530 NCBIfam purine/pyrimidine permease 41 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05754 Trre-Chr1 62432066 62436252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05754 10 530 Organic Solute Cotransporters AT1G49960 66.922 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05754 - K23717 gmx:100820533 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05754 1 62432066 62436252 Trre1g05754 1 62432066 62436252 ECH