Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05748 ATGTTGCAAACCCTAGTAATACCCTCAAGCTTGCGCTTCGCGAATCGAATATCCCTCAGAAGAAGCTTTAGCGTTCGTGCATTCACTTTCCCCTCCTCCGATTATGAAGATCAGTCTCGTGGTGGCCTCCCTCGCTTCTACTCCGAAACTCTTCCTCATTCCAAGGGTAATGTTATTCGGGTAAAAGGCGATGAATTCTGGCACATGACAAAAGTTTTGAGGTTGTCCACCAATGATAGGGTACAGCTCTTCAATGGGAAAGGAGGTTTGGTAGAAGGATCCATACAGAACATTGACCGCACTGGAGTTGATTTTGTTGCACTGACTGATCTGAAATTAATGCCTCCGCAGAATTTTCAATTGCATGTATTTTCTGGTTTTGGTACTCTGAAGGGTGGCCGTGCTGACTGGCTTGTCGAGAAGTGTACAGAACTTGGAGCCAGTAGTGTTACTCCGCTGTTGACTGAACGTTCACCGTCAATCTCAGAAAATCGGGTGGACAGACTGGAACGTGTCATTTTAGCAGCATCTAAACAATGTCAAAGACTGCATGAAATGGTCCTGAAACCTCCTGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAAAGCTATCTCTTGTTGCAACAGCAGAAGCAGCTCATGTTCTAAATGCATTGACATCATTGGAAAAGGAAACTAGTGGCTTAATCATAGTTGGACCAGAGGGAGATTTCACCGAGAAAGAAGTAAATATGATGATGGAAGCAGGTGCTAAAGCCGTTAAACTGCCACGATAG 783 0.4432 MLQTLVIPSSLRFANRISLRRSFSVRAFTFPSSDYEDQSRGGLPRFYSETLPHSKGNVIRVKGDEFWHMTKVLRLSTNDRVQLFNGKGGLVEGSIQNIDRTGVDFVALTDLKLMPPQNFQLHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMVLKPPVEIGDILHLIAQSKLSLVATAEAAHVLNALTSLEKETSGLIIVGPEGDFTEKEVNMMMEAGAKAVKLPR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05748 260 NCBIfam RsmE family RNA methyltransferase 56 258 IPR006700 GO:0006364|GO:0008168
Trre1g05748 260 SUPERFAMILY PUA domain-like 46 106 IPR015947 -
Trre1g05748 260 Pfam RNA methyltransferase PUA domain 62 106 IPR046887 -
Trre1g05748 260 Gene3D - 42 260 IPR029026 -
Trre1g05748 260 Pfam RNA methyltransferase domain 120 258 IPR046886 -
Trre1g05748 260 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 42 258 IPR006700 GO:0006364|GO:0008168
Trre1g05748 260 PIRSF MTase_slr0722 43 260 IPR006700 GO:0006364|GO:0008168
Trre1g05748 260 FunFam uncharacterized protein LOC106771328 isoform X2 42 260 - -
Trre1g05748 260 SUPERFAMILY alpha/beta knot 118 258 IPR029028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05748 Trre-Chr1 62412433 62415183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05748 K09761 - gmx:100777253 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05748 1 62412433 62415183 Trre1g05748 1 62412433 62415183 ECH