Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05484 ATGTCAATGGCTTTCTGTCACAGACTTGACAACTTCATCATCTCTGCTTTTAAACCGCAAAACTCATATACCCATCTTTCAATTCAACCTTCTTTCAATCTCCCATCTCATTCTTCCTTCAAAGTTCAAAACTTTCCTTTCAGGGTTCGTTATAATCCAACTATTAGAGCCACTTCATCATCCTCTTCTCCTCCTACAACCATTGTTGAACCAAATGGCATTAAGATTAATTCTATTCCTACCAAACCTATAGAAGGACAAAAGACTGGTACAAGTGGTCTACGAAAGAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCAAATTGGATTCAGGCACTGTTTAATTCATTGCCTCCGGAGGATTACAAAAATGGAGTCTTGGTGTTGGGAGGTGATGGTCGATACTTCAATCGAGAAGCTGCGCAGATAATAATCAAAATTGCTGCTGGAAACGGTGTTGGAAAAATACTGGTCGGAAAGGAAGGGATATTATCAACACCAGCCGTTTCTGCTGTTATAAGGAAGAGGCAGGCAAATGGTGGATTTATTATGAGTGCGAGCCATAATCCCGGTGGTCCTGAATACGATTGGGGTATTAAGTTTAATTATAGTAGTGGACAACCTGCACCAGAATCCATCACCGACAAGATTTACGGAAACACCCTATCTATTTCTGAGATAAAGATTGCTGATATTCCCGACGTTGACTTATCAAATGTTGGAGTTACAAACTTTGGAAGCTTCAGCGTGGAAGTAATAGACCCAGTTTCTGATTATCTGGAGCTATTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGTCTTATTTCACGGCCAGATTTTAGGTTTACATTCGATGCCATGCATGCAGTTGCTGGTGCTTATGCAACACCCATCTTTGTTGATAAACTTGGTGCTAGTCCGGATTCAATTTCAAATGGAATACCTTTGGAAGATTTTGGACATGGTCATCCCGATCCTAATCTAACATATGCAAAGGATCTTGTTAACATTATGTATGCTGAAAACGGACCTGATTTCGGAGCTGCTAGTGATGGTGATGGAGATAGAAATATGATTTTAGGATCGAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAAAGAAGCGATTCCATACTTCAAGAACAGTGTTAAGGGTCTTGCAAGATCAATGCCGACAAGTGGTGCTCTAGATAGAGTTGCTGAAAAGTTGAACCTTCCTTTCTTCGAGGTTCCCACTGGTTGGAAGTTTTTTGGGAATCTTATGGATGCTGGGAATCTGTCGATTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAGGACGGAATCTGGGCAGTACTAGCTTGGCTTTCTATTATTGCTCACCGCAACAAAGACACGAAGCCCGGGGAAAAATTGGTTTCTGTATCTGATGTTGTGAAGGAGCACTGGGCAACCTACGGTAGAAATTTCTTTTCTAGATATGACTACGAGGAATGTGAATCTGAAGGCGCCAATAAGATGGTAGAGTACCTACGAAAGCGTTTGTCTGAGAGCAAGCCCGGTGATAAGTACGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGAGTTCGGTTTGTTTTTACAGATGGTTCAAGGATTATTTATCGTTTATCAGGAACGGGTTCTGCTGGTGCAACTGTTAGAGTGTATATTGAACAGTTTGAACCAGATGTTTCTAAACATGACGTTGATGCTCAAGTTGCCTTGAAACCATTGATAGACTTAGCACTATCTGTTTCAAAGCTCAAAGACTTCACAGGGAGAGAGAAGCCTACAGTCATCACTTAA 1893 0.4105 MSMAFCHRLDNFIISAFKPQNSYTHLSIQPSFNLPSHSSFKVQNFPFRVRYNPTIRATSSSSSPPTTIVEPNGIKINSIPTKPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKRQANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVDLSNVGVTNFGSFSVEVIDPVSDYLELLETVFDFQLIKGLISRPDFRFTFDAMHAVAGAYATPIFVDKLGASPDSISNGIPLEDFGHGHPDPNLTYAKDLVNIMYAENGPDFGAASDGDGDRNMILGSSFFVTPSDSVAVIAANAKEAIPYFKNSVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGEKLVSVSDVVKEHWATYGRNFFSRYDYEECESEGANKMVEYLRKRLSESKPGDKYGSYVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQVALKPLIDLALSVSKLKDFTGREKPTVIT 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05484 630 Gene3D - 476 630 - -
Trre1g05484 630 SUPERFAMILY Phosphoglucomutase, C-terminal domain 495 630 IPR036900 GO:0016868|GO:0071704
Trre1g05484 630 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 553 605 IPR005843 GO:0016868|GO:0071704
Trre1g05484 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 87 226 IPR005844 GO:0005975|GO:0016868
Trre1g05484 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 76 288 IPR016055 GO:0005975|GO:0016868
Trre1g05484 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 281 300 IPR005841 GO:0005975|GO:0016868
Trre1g05484 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 317 330 IPR005841 GO:0005975|GO:0016868
Trre1g05484 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 181 195 IPR005841 GO:0005975|GO:0016868
Trre1g05484 630 PRINTS Phosphoglucomutase/phosphomannomutase family signature 346 361 IPR005841 GO:0005975|GO:0016868
Trre1g05484 630 FunFam Phosphoglucomutase 5 75 263 - -
Trre1g05484 630 Gene3D - 264 366 - -
Trre1g05484 630 Gene3D - 367 465 - -
Trre1g05484 630 FunFam Phosphoglucomutase, cytoplasmic 1 367 465 - -
Trre1g05484 630 FunFam Phosphoglucomutase 5 264 366 - -
Trre1g05484 630 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 182 191 IPR016066 GO:0000287
Trre1g05484 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 258 367 IPR016055 GO:0005975|GO:0016868
Trre1g05484 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 259 361 IPR005845 GO:0005975
Trre1g05484 630 FunFam Phosphoglucomutase 5 476 630 - -
Trre1g05484 630 SUPERFAMILY Phosphoglucomutase, first 3 domains 354 500 IPR016055 GO:0005975|GO:0016868
Trre1g05484 630 Gene3D - 74 263 - -
Trre1g05484 630 CDD PGM1 79 630 - -
Trre1g05484 630 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 74 630 IPR045244 GO:0004614|GO:0005975
Trre1g05484 630 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 370 493 IPR005846 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05484 Trre-Chr1 60351610 60356839 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05484 K01835 - gmx:100802730 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05484 1 60351610 60356839 Trre1g05484 1 60351610 60356839 ECH