Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05472 ATGGGTTGGTTCTTGGCACAATTTATATGTGCATTTCTTGCTGGAAGCTTGTTCTTTAATGGTTTATCTTATTCTTATAAAGCTCCAAAGTACACATTTATCAAAGAAGCAACATTTGCTCCTCCAATCTTAAGATATGACTATATAGTAATAGGTGGAGGATCATGTGGTTGTCCACTAGCAGCAACACTTTCACATGGTGGAAAAGTTTTAGTCCTTGAAAGAGGAGGTTCACCATATACAAATCCAGAAAAAATCAAAATAAATAAGTTTGTTCATGCTCTTTTTAACACAAGTCCTTCATCATTCTCCCAACAATTCATATCAACCGATGGTGTTCTCAATGCTCGTGCTCGCGTCTTAGGAGGTGGTTCTGTCTTGAATGCTGGATTCTACTCAAGGGCTAGCAAAAGGTACATAAGAGAATCTGGTTGGAATGAAACTTTGGCTAAGAGTTCATATGAATGGGTTGAAAAGAAAGTTGCTTTTGAACCTCCAATGATGCAATGGCAATCGGCAGTGAGGGATGGTTTACTTGAAGCAGGGGTTTTGCCTTACAATGGTTTTACTTTTGATCATTTATATGGGACTAAGGTTGGAGGGTCAATTTTTGATAAGGAAGGTCATAGACACACTGCAGCTGATTTGTTAGAGTATGCTGATCCAAGAAGAATTACTGTTTATTTGCACGCCACGGTGCAGAAGATACTGTTCAAGTACAATGCAAAAAAAAAGAGGCCACAAGCTTATGGAGTGATATTCAAAGATGCATTGGGAATCATACATAGAGCATACATAAGGTCCAAAGTGAAGAATGAAATAATAGTATCAGCTGGTGCAATTGGAAGTCCACAGTTACTGATGCTGAGTGGTATTGGTCCAGCTAAACATCTTAAGGCACATCGAATCAAAGTGGTTTTGGATCAGCCTTTGGTTGGTCAAGGGATGGCAGATAATCCAATGAATATTCTAGCTGTTCCTTCTCCTTTACCTGTCGAAGTTTCTCTCGTTGAAACAGTTGGAATCACTAAATTTGGTAGCTTCATTGAAGCAGCTAGTGGATTGAACTTTGGTAATTCATGGTCTGATAGGCTTAGAGGGCTTTTTGAATTTGTGTCAAACCAGAGTGGCCTACCAGTACCGCACGAGTTCACACCAGAAGCCATGAAAAGTTTTGCAGACATAATTCGATCATTAGACAGTTCAACTCTCAAAGGAGGAATCATACTAGAAAAGATAAGAGGACCAAGATCAACAGGTCACCTAGAACTCGTAACAAATAATCCCGATGCTAATCCATCAGTTACATTTAACTATTTCAAAGATCCAGAAGACTTGAAAATGTGTGTGGAAGGCATGAAAATCATCATAAATGTGATAAACTCAAAAGCATTCTCAAGATTTCGGTATCCCAACATTTCTGTCAAAACTCTAATGGACTGGATGTTATACATTCCAGTGAATTTGAGGCCAAAACATCGTAACGCTGCATTTTCTTTGGAACAATATTGCATCGACACTGTCTTAACAATTTGGCATTATCATGGAGGTTGCCAAAATGGTAAAGTTGTCGATCATAATTATAAAGTCATTGGTGTGGAAGCTCTTAGAGTAATTGATGGATCGACTTTTTATCGCTCACCAGGGACTAATCCTCAAGCTACTGTAATGATGCTCGGAAGGTATATGGGACAAAAGATTATAAAGAAAAGACTCTCTCACAGGAGGAAGTTAAGTGACAAATTAAATTAA 1752 0.3841 MGWFLAQFICAFLAGSLFFNGLSYSYKAPKYTFIKEATFAPPILRYDYIVIGGGSCGCPLAATLSHGGKVLVLERGGSPYTNPEKIKINKFVHALFNTSPSSFSQQFISTDGVLNARARVLGGGSVLNAGFYSRASKRYIRESGWNETLAKSSYEWVEKKVAFEPPMMQWQSAVRDGLLEAGVLPYNGFTFDHLYGTKVGGSIFDKEGHRHTAADLLEYADPRRITVYLHATVQKILFKYNAKKKRPQAYGVIFKDALGIIHRAYIRSKVKNEIIVSAGAIGSPQLLMLSGIGPAKHLKAHRIKVVLDQPLVGQGMADNPMNILAVPSPLPVEVSLVETVGITKFGSFIEAASGLNFGNSWSDRLRGLFEFVSNQSGLPVPHEFTPEAMKSFADIIRSLDSSTLKGGIILEKIRGPRSTGHLELVTNNPDANPSVTFNYFKDPEDLKMCVEGMKIIINVINSKAFSRFRYPNISVKTLMDWMLYIPVNLRPKHRNAAFSLEQYCIDTVLTIWHYHGGCQNGKVVDHNYKVIGVEALRVIDGSTFYRSPGTNPQATVMMLGRYMGQKIIKKRLSHRRKLSDKLN 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05472 583 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Trre1g05472 583 SUPERFAMILY FAD/NAD(P)-binding domain 44 570 IPR036188 -
Trre1g05472 583 PIRSF Alcohol_oxidase 34 577 IPR012132 GO:0050660
Trre1g05472 583 Pfam GMC oxidoreductase 416 561 IPR007867 GO:0016614
Trre1g05472 583 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 517 - -
Trre1g05472 583 Gene3D - 46 560 IPR036188 -
Trre1g05472 583 PANTHER OSJNBA0019K04.7 PROTEIN 16 572 - -
Trre1g05472 583 Pfam GMC oxidoreductase 46 320 IPR000172 GO:0016614|GO:0050660
Trre1g05472 583 Gene3D - 163 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05472 Trre-Chr1 60225865 60229259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05472 27 571 Miscellaneous Gene Families AT5G51950 60.838 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05472 - - gmx:100780453 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05472 1 60225865 60229259 Trre1g05472 1 60225865 60229259 ECH