Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05470 ATGGGTTCCTCTAGAGGTGAATCAGCATCATGGTATTGTGCAATAGCGTTATTGGGTATGATATTGTTAGGATCAATAAGAGAAAGTACTGTGGCTGAATTAGAAGTAAGAGGGAACCACCTTGGTGATCATAAAGCATGTGATGAGATATATGTGGTTGGAGAAGGAGAAACACTTAACACAATTAGTGAAAAATGTGGTGACCCGTATATTGTGGAGCGGAACCCACATATCCATGACCCGGATGATGTTTTCCCTGGTCTTGTTATTAGAATCATCACACCAAACAATACTAGGAAATTGTTGAAGACATAG 315 0.3968 MGSSRGESASWYCAIALLGMILLGSIRESTVAELEVRGNHLGDHKACDEIYVVGEGETLNTISEKCGDPYIVERNPHIHDPDDVFPGLVIRIITPNNTRKLLKT 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05470 104 Gene3D LysM domain 43 101 IPR036779 -
Trre1g05470 104 CDD LysM 50 92 IPR018392 -
Trre1g05470 104 Pfam LysM domain 51 92 IPR018392 -
Trre1g05470 104 PANTHER EMBRYO SAC 1 6 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05470 Trre-Chr1 60213096 60213410 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05470 - - qsu:112037248 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05470 1 60213096 60213410 Trre1g05470 1 60213096 60213410 ECH