Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05466 ATGGATTCCTCCGACTTGAAGAAAGACCAAGCTCCATCCACACCCGAAGACCCCGAGAAGAAGAAGAAAAAGGAAGAAAAGGCAAGAGAGAAGCAATTGAAGAAAGAGAAGTTTCTTCAGAAACAAGCTCAGCAACAACAAGTGCAACAATCATCCACTGCTTCTAAAAAGAGTGAAAAGAAAACTGTGAAGCGCGGCGCAGAGGATGAAACTCCTGCAGATTACATTGATCCTGAGACTCCATTGGGTGATAAGAAGCAAATGTCTCGGCAATTGGCGAAACAGTATAATCCAACTGCCGTGGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAAAGTATTTTGTGGCAGATGCTAGCAGCACAAAACCACCTTTTGTTATTGTTTTGCCTCCACCAAATGTGACGGGTGCTCTCCATATAGGTCATGCTCTAACAGCTGCAATAGAGGATACAATGATTCGTTGGCGAAGAATGTCTGGATACAATACTTTGTGGGTGCCTGGGATGGATCATGCGGGAATTGCTACACAGGTAGTTGTGGAGAAAAAGATAATGCGTGAAAAGCAACTAACCAGGCATGATTTGGGCCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTACGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAAAGATCTAAGGCTGTGACAGATGCTTTTGTGAGGCTTTACAAGCAAGGCCTTGTTTATAGGGACTTACGGTTAGTAAATTGGGATTGTGTGCTACGAACAGCAATATCTGATATTGAGGTGGATTATATTGATATAAAAGAAAGGACCCTGCTAAAGGTTCCAGGATACGACAAACCTGTTGAATTTGGCGTTTTAACAAAATTTGCTTACACTCTGGAAGGGAACCTTGGTGAAATTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGCGACACTGCAATTGCCGTACATCCTACTGATGACCGATACCGTCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAGAAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTTGGGACAGGTGCTGTTAAGATTACACCAGCCCATGATCCTAATGATTTTGAGGTTGGAAAACGTCACAACCTTGAATTTATTAATGTTTTCACCGACGATGGGAAAATAAATTCCAATGGTGGCTCTGAATTTTTGAACATGCCACGATTTAAAGCTCGGGAAGCAATAACTGAAGCATTAAAAAAGAAGGATCTTTATAGAGGCTCTGAAAACAATGAGATGCGCCTTGGTGTATGTTCAAGAAGCAATGATGTTATAGAGCCCATGATAAAGCCACAGTGGTATGTTAATTGCAGTGATATCGCAAAGGAAGCTCTCCATGCTGTCACGGATGAGGAAAACAAAAGGGTGGAGATTATTCCAAAACAATATGTGGCTGATTGGAAGAGATGGCTAGAAAACATACGTGATTGGTGCATTTCACGGCAGCTATGGTGGGGTCACCAAATTCCTGCATGGTATGTCACTTTAGAGGATGATATACTGCAGGAATTGGGTGCTTACAATGACCATTGGGTAGTGGCAAGAAATGAAGAGGAAGCCCGAGATGAGGCTAACCAAAGATATAGTGGAAAGAAGTTTCATTTAAGCCGGGACCCCGACGTTCTTGATACATGGTTTTCTTCTGGTCTGTTCCCATTAACTGTGCTGGGATGGCCTGATGACACAGAAGACCTGAAGGCATTCTATCCAACTTCTGTTTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATGAAGTTGGGCGGTGATGTTCCTTTTAGCAAGATTTATTTGCACCCAATGATTCGTGATGCACATGGGCGCAAGATGTCCAAGTCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGTATATCACTGGAAGGTCTACATAAGAGGTTAGAAGGAGGTAACCTTGACCCTAAGGAACTAGCTGTTGCAATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGTGCTGATGCCCTCCGTTTTGCCCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAATTATGGAATGCAGTACGATTTGCTATGAGCAAGCTCGGAGATGATTATAGCCCTCCTGCAAATTTGACTCCAGATGCTCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAATAAAACAATATCGAAAATATCCAAGTCTCTAGAATCATATGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTCATTGAAGTGATCAAGCCTTACTTTTCTGGCAATGATCCCGAGATTGCTTCCAAAAGACGTGCAGCTCAAGATACTTTGTGGTTTTGTCTGGACAATGGTCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACAGAAGAATTGTGGCAACGCCTTCCTTCACCCAGGGAATCTAAGAGAGAAGACTCTATCATGATAGCTGATTATCCATCAGTTATAGAGAGCTGGAATAATGAAAAGGTAGAGAGTGAGATGGACCTCATTGAGTCTACTGTTAAGTCTCTCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGAGCGGCTTTTGTTCTTTGCCGAAAGCCAGAGGTTGCAGATTTTATTAACAACCATCAATTGGAGATTACTACACTAGCTAATCTATCCTCTTTAACCGTAATCACTGATGTTAAAGCGGTTCCATCTGATTATGCTAATACTGTCGTAAATGGAGACCTTTCTGTTTATTTAGAGCTTCATTCTGCAGAAGCGGAGCCTGGAAAGATGAAGAAGATTACTGAGCTGAAAACGCAAATAGAAAGATTAGAGAAGAGTATGAATGTTCCAGGTTATGAAGAGAAGGTTCCGCAACAAGTTCGATCCAGGAATGTGGAGAAGCTAGAATCCTTAAAGAAGCATTTATTGCTCGAGGAAACAGCCGGTCTGAGTGTCCAGATTCAAAATGTTCAACTTGATTGA 3159 0.422 MDSSDLKKDQAPSTPEDPEKKKKKEEKAREKQLKKEKFLQKQAQQQQVQQSSTASKKSEKKTVKRGAEDETPADYIDPETPLGDKKQMSRQLAKQYNPTAVEKSWYEWWEKSKYFVADASSTKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMREKQLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKAVTDAFVRLYKQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERTLLKVPGYDKPVEFGVLTKFAYTLEGNLGEIVVATTRIETMLGDTAIAVHPTDDRYRQFHGKYAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFKAREAITEALKKKDLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENKRVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDILQELGAYNDHWVVARNEEEARDEANQRYSGKKFHLSRDPDVLDTWFSSGLFPLTVLGWPDDTEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEGGNLDPKELAVAIEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYSPPANLTPDALPFSCQWILSVLNKTISKISKSLESYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDPEIASKRRAAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRESKREDSIMIADYPSVIESWNNEKVESEMDLIESTVKSLRSLAKERRDRRAAFVLCRKPEVADFINNHQLEITTLANLSSLTVITDVKAVPSDYANTVVNGDLSVYLELHSAEAEPGKMKKITELKTQIERLEKSMNVPGYEEKVPQQVRSRNVEKLESLKKHLLLEETAGLSVQIQNVQLD 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05466 1052 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 133 144 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre1g05466 1052 Pfam tRNA synthetases class I (I, L, M and V) 105 728 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre1g05466 1052 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 299 449 IPR009008 GO:0002161|GO:0006418
Trre1g05466 1052 Coils Coil 21 41 - -
Trre1g05466 1052 Hamap Valine--tRNA ligase [valS]. 92 1045 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 FunFam Valine--tRNA ligase, mitochondrial 94 292 - -
Trre1g05466 1052 MobiDBLite consensus disorder prediction 39 56 - -
Trre1g05466 1052 Coils Coil 892 912 - -
Trre1g05466 1052 MobiDBLite consensus disorder prediction 1 38 - -
Trre1g05466 1052 CDD Anticodon_Ia_Val 727 866 IPR033705 -
Trre1g05466 1052 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 739 971 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre1g05466 1052 Pfam Anticodon-binding domain of tRNA ligase 773 915 IPR013155 GO:0004812|GO:0006418
Trre1g05466 1052 PANTHER VALYL-TRNA SYNTHETASES 69 1039 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 Gene3D - 733 916 - -
Trre1g05466 1052 MobiDBLite consensus disorder prediction 1 91 - -
Trre1g05466 1052 NCBIfam valine--tRNA ligase 93 1027 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 FunFam Valine--tRNA ligase, mitochondrial 419 652 - -
Trre1g05466 1052 Gene3D - 300 445 IPR009008 GO:0002161|GO:0006418
Trre1g05466 1052 Gene3D HUPs 477 726 IPR014729 -
Trre1g05466 1052 MobiDBLite consensus disorder prediction 57 72 - -
Trre1g05466 1052 FunFam Valine--tRNA ligase, mitochondrial 300 441 - -
Trre1g05466 1052 Gene3D HUPs 93 289 IPR014729 -
Trre1g05466 1052 CDD ValRS_core 124 727 - -
Trre1g05466 1052 PRINTS Valyl-tRNA synthetase signature 126 137 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 PRINTS Valyl-tRNA synthetase signature 572 593 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 PRINTS Valyl-tRNA synthetase signature 337 354 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 PRINTS Valyl-tRNA synthetase signature 454 467 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 PRINTS Valyl-tRNA synthetase signature 603 621 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Trre1g05466 1052 FunFam Valine--tRNA ligase, mitochondrial 682 917 - -
Trre1g05466 1052 SUPERFAMILY Nucleotidylyl transferase 92 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05466 Trre-Chr1 60189425 60198835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05466 K01873 - gmx:100798111 1771.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05466 1 60189425 60198835 Trre1g05466 1 60189425 60198835 ECH