Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05454 ATGGGGGCTAGTATTTCTTCAACTTCATCAATAAGAGAAAAATATGATGAAGGGTCAAATTCTTCATCATCAAGAACTAGTCTTGGTGATATTCCAGAGAGTTGCATATCTTCTATCCTTATGAATCTTGATCCACCTGATATATGCAAATTGGCTAGAGTCAATCATGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTATGGGAATCAAAGTTACCATCATGCTACAATTTTCTTGCTAATAAAGTTCTTGGTCAAGAAAATCTTTCTACTATGACTAAGAAAAATATCTACACAAAACTTTGTCAAAGAAATCTCTTTGATAATGGTACCAAAGAAGTTTTGTTGGATAAATGCAGTGGACAAGTTTGTTTATTCATGTCATCAAAGTCTTTGAAGATAACAGGAATTGAAGATAGAAGATATTGGATTTATATTCCAACTGAGGAATCAAGGTTTAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAGTAGGGGAGTTAGAGTTTGTATTCCCTGTGGGTAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAATCATCGAAACGATTGGGTCGGCGTGTGTGCAACGTTGATCAAGTGCATGGCTGGGACATCAAGCCGGTTCGATTCCAACTCTCTACATCGGATGGTCAGCGTTCGATCTCTGAGTGTTACTTGAATGGGCCAGGCGAATGGGTTTATTACCATGTAGGTGATTTCATGGTTGTAAAGCCCAATGAGTCCATAAAGATAAAGTTTTCTTTGGCCCAAATTGATTGTACTCATACCAAAGGTGGCCTCTGTATAGATAGTGCAATTATTTGCCCAACTGAGTTTAGAGAAAAACTCAAAAATATTTAG 876 0.3721 MGASISSTSSIREKYDEGSNSSSSRTSLGDIPESCISSILMNLDPPDICKLARVNHAFHRASSADFVWESKLPSCYNFLANKVLGQENLSTMTKKNIYTKLCQRNLFDNGTKEVLLDKCSGQVCLFMSSKSLKITGIEDRRYWIYIPTEESRFKNVAYLQQMWWVEVVGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQRSISECYLNGPGEWVYYHVGDFMVVKPNESIKIKFSLAQIDCTHTKGGLCIDSAIICPTEFREKLKNI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05454 291 Pfam Phloem protein 2 123 281 IPR025886 -
Trre1g05454 291 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Trre1g05454 291 SUPERFAMILY F-box domain 16 99 IPR036047 GO:0005515
Trre1g05454 291 PANTHER F-BOX PROTEIN PP2-A15 10 288 - -
Trre1g05454 291 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g05454 291 Gene3D - 14 119 - -
Trre1g05454 291 SMART fbox_2 31 70 IPR001810 GO:0005515
Trre1g05454 291 CDD F-box_AtSKIP3-like 28 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05454 Trre-Chr1 60073659 60076770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05454 - - gmx:100795463 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05454 1 60073659 60076770 Trre1g05454 1 60073659 60076770 ECH