LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05426	ATGGGTAAGCAAAAACAACAAGTCATTTCCCGTTTCTTCGCTCCTAAACCAAAACCCCCTCCACCGACCACCGATCCACCTCCACCTGCTTCCTCTCCTTCTCGTCCAACCCCTTCCACTCCCAAAATCTCCGCCACCGTCAATTTCTCTCCATCCAAACGCCGCCTAATCTCTCAACTAACATCATCCCCTAACAAACAACCCAAACTCTCCCCACACACTAACAACCCTATACCCTCTCCATCCAATCCCTCCCTCCACCAACGCTTCCTCCAGAAGCTTCTTGAACCTTCTCCTCCAGACCCACAACTTCCTTCATCTTCCAAACCGGTAAAGTTTACTCCTTTAGAGCACCAGGTAGTGAAACTCAAAGCTAAATATCCTGATGTTCTTTTAATGATTGAAGTTGGTTACAAGTATCGGTTTTTCGGCGAAGATGCTGAGAATGCTGCTAGAGTTTTGGATATATATGCGCACATGGATCATAATTTTTTAACTGCTAGTATACCAACTGTTCGATTAAATGTCCATGTGAGGAGGCTTGTAAGTGCAGGGTATAAGGTTGGTGTTGTTAAGCAGACTGAGACTGCTTCCATTAAGGCCCATGGTTTGAACCGGGCTGGCCCATTTTGCCGAGGCTTGTCGGGGTTGTACACCAAGGCGACATTAGAGGCGGCTCAGGATTTGGGAGGAGGGGAAGATGAGTGTGGGAGTGTGAGTAACTATTTGTTGTGTGTTGTGGAGAAGAGCATTTTGGGAGAGAAAAAATCTAATTGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGAATTGTTGGTGTGGAGATATCGACCGGAGATGTTGTTTATGGAGAGTTTAATGATAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTGAGCTTGTCTCCTGCTGAGTTGCTTCTTGGGGATCCTCTTTCAAAACAAACTGAGAAGTTACTATTGGCTTTTGCTGGACCCTCCTCAAATGCTCGTGTGGAGCATGCCTCACGAGATTGCTTCACTGGTGGAGGCGCTTTTGCTGAAGTTACGACCTTGTATGAGAACATGCATGTTGACAGTCCACCAGAGTCAATGCAAAACAATGAATTGACTGAGCATAGAAGTCAGCAGGTAGTTAAGGAGGTGATGGACCTGCCAGATTTGGCAGTTGAAGCTTTGGCCTTAACTATTCGCCATTTGAAGGGATTTGGTTTTGAAAGAATTCTGTGCTCAGGTGCTATAAGGCCTTTCGTAAGCAATACGGAGATGACTCTCTCAGCCAATACACTTCAACAACTGGAGGTTTTACAAAATAACAGCGATGGATCTGAGAGTGGTTCCTTGCTGCAAATTATGAACCAGACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCACACCCATTGTGTGATCAAACCTTGATTGCTGCCCGTCTTAATGCTGTATCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGCATGAAGAATCTTGAATGTTATGAGGAAGATTCTGATGTAGCAATTGTGCAGCCTGCTTTAGCGAATATACTTTCATCGGTTTTGGCATCCCTGGGCCGGGCACCTGATATACAGCGTGGGATTACTAGAATTTTCCATCGCACTGCTACTCCATCTGAGTTTATTGCCATTATTCAAGCTGTTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGGGATGGCGATAATAGTAATAATAAATTGCGCTCTGAATTGTTGAAGAAGTTAATTTCAACTGCTTCCTCTGCAAGTGTTATTGGTAATGCTGCAAAGATGTTGTCATCTTTAAATAAAGACTCTGCTTATCAAGGAGATCTGACAAATATGTTCATTGCAACTGAGGGACAATTTCCAGAGGTAATTACAGCTAGAAAGGATTTTCAGATGGCAGTGGAACAATTAGATTCATTGATTGACTTGTACCGCAAACAGCTTGGAATGCGAAATTTGGAATATATGTGTGTTTCTGGTATAACTCACTTGATAGAGTTATCAACTGATGTAAAAGTTCCTTCAAATTGGGTCAAGGTAAATGGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGGGTTATCGTTAGCGAAAGAGAAGCTTACTGTTGCCTGCCGAGCTGCTTGGGATAGCTTTCTGAGGGATTTCAGTAAACACTATGCGGAGTTCCAAGCTTCTATTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTCCGCCCTGTTTTTGTAGACGATCACGAGCCTGTTCAGATACAAATTTATTCTGGTAGACACCCGGTTTTGGAGACTACTTTACAAAATGATTTTGTCCCAAATGATACAAACATGCATGCGGATAGAGAGTACTGTCAAATTGTAACTGGACCCAATATGGGGGGGAAAAGTTGCTATGTTCGCCAAGTGGCTCTGATCACTCTCATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGTATGTACTGGACGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGTTAGGGAGAAGCACCTTCCTAGAAGAATTGAGTGAGACGTCACATATACTTCATAGATGTACAGGACGTTCACTCGTTATACTTGATGAGCTTGGGAGGGGTACAAGTACACATGACGGCATGGCCATCGCTTATGCGACATTACATTATCTTCTGAAGCAGAGGAAAAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCCTGTCTGGAAACTGAATTTCCAGGTTCTGTAGCAGCATATCACATGTCCCATCTGACTGCACACAATGATGCAAGTAGAAAATCCAATGATCATGAAAATGTCACTTATCTATATAAGCTCGTACCTGGTGTTTCAGAGAGGAGTTTTGGTTTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATTAGCCGAGCTATTGTCATGGCTTCCAAACTAGAAGCACTAGTAAACAGTAGAATGCATGGTAGATCAGGAAAGCAGTTGTTGTTGGATGCACCTGTTATTGATCAAGAGCATGAACCGCATGATTGTCCACATCAAGAATTTGGTCGTGCTTATAAGGAATTTTATTCAAACTTAAAAGCTGCAATATTAGACGATGACCATGCAAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGAAATTAGTTAGCAGAATTCTTGTCCTGGTTGCAGATGAGGGTGTAGCGAAGTAG	3303	0.4317	MGKQKQQVISRFFAPKPKPPPPTTDPPPPASSPSRPTPSTPKISATVNFSPSKRRLISQLTSSPNKQPKLSPHTNNPIPSPSNPSLHQRFLQKLLEPSPPDPQLPSSSKPVKFTPLEHQVVKLKAKYPDVLLMIEVGYKYRFFGEDAENAARVLDIYAHMDHNFLTASIPTVRLNVHVRRLVSAGYKVGVVKQTETASIKAHGLNRAGPFCRGLSGLYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSILGEKKSNCGVEGGFDVRIGIVGVEISTGDVVYGEFNDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVEHASRDCFTGGGAFAEVTTLYENMHVDSPPESMQNNELTEHRSQQVVKEVMDLPDLAVEALALTIRHLKGFGFERILCSGAIRPFVSNTEMTLSANTLQQLEVLQNNSDGSESGSLLQIMNQTLTIFGSRLLRHWVSHPLCDQTLIAARLNAVSEIAESMGTCNGMKNLECYEEDSDVAIVQPALANILSSVLASLGRAPDIQRGITRIFHRTATPSEFIAIIQAVLSAGKRLQQLNIGEGDGDNSNNKLRSELLKKLISTASSASVIGNAAKMLSSLNKDSAYQGDLTNMFIATEGQFPEVITARKDFQMAVEQLDSLIDLYRKQLGMRNLEYMCVSGITHLIELSTDVKVPSNWVKVNGTKKTIRYHPPEVVTALDGLSLAKEKLTVACRAAWDSFLRDFSKHYAEFQASIQALAALDCLHSLAILSRNKGYVRPVFVDDHEPVQIQIYSGRHPVLETTLQNDFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQVALITLMAQVGSFVPASSAKLYVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTGRSLVILDELGRGTSTHDGMAIAYATLHYLLKQRKSLVLFVTHYPKIACLETEFPGSVAAYHMSHLTAHNDASRKSNDHENVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRMHGRSGKQLLLDAPVIDQEHEPHDCPHQEFGRAYKEFYSNLKAAILDDDHAKSFQLLENARSIAKKLVSRILVLVADEGVAK	1100

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g05426	1100	SMART	mutATP5	811	1009	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	FunFam	DNA mismatch repair protein MSH3	767	1039	-	-
Trre1g05426	1100	MobiDBLite	consensus disorder prediction	37	73	-	-
Trre1g05426	1100	FunFam	DNA mismatch repair protein Msh3	609	735	-	-
Trre1g05426	1100	SUPERFAMILY	DNA repair protein MutS, domain I	107	222	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	Gene3D	-	609	735	-	-
Trre1g05426	1100	SMART	DNAend	444	794	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	FunFam	DNA mismatch repair protein	237	421	-	-
Trre1g05426	1100	SUPERFAMILY	DNA repair protein MutS, domain II	240	439	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	FunFam	DNA mismatch repair protein	104	234	-	-
Trre1g05426	1100	Pfam	MutS domain V	814	1012	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	118	1031	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Trre1g05426	1100	PIRSF	Msh6	103	1062	IPR017261	GO:0006298\|GO:0030983
Trre1g05426	1100	MobiDBLite	consensus disorder prediction	14	36	-	-
Trre1g05426	1100	MobiDBLite	consensus disorder prediction	1	86	-	-
Trre1g05426	1100	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	767	1012	IPR027417	-
Trre1g05426	1100	Gene3D	-	767	1037	IPR027417	-
Trre1g05426	1100	Pfam	MutS domain III	429	759	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	Pfam	MutS domain I	114	224	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	Gene3D	-	426	759	-	-
Trre1g05426	1100	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	892	908	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	Pfam	MutS domain II	241	326	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	Gene3D	MutS, connector domain	237	423	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Trre1g05426	1100	SUPERFAMILY	DNA repair protein MutS, domain III	428	764	IPR036187	-
Trre1g05426	1100	Gene3D	DNA repair protein MutS, domain I	105	231	IPR016151	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05426	Trre-Chr1	59855577	59866118	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05426	K08736		-	gmx:100789883	1613.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre1g05426	1	59855577	59866118	Trre1g05426	1	59855577	59866118	ECH