Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05422 ATGGTTAAGGTAACTATAGTTGGAAGGGTAAGTGATGGGTTACCTCTAACACAAGGACTAAGATATGTGAATGAAGAAAATTCATATCTTTCATTTTATAGGCAACAAGCAGAGTTTATAGTCCAAGAAATTTCAAAAGGAACATTGACACCTTCCATGATGACCATTCTCATTGACCATTACTGCTTCAACTTCTTGGTAGAGAATGGAGTTGTTTACATTGTTTTGTGTGAGTCCACATACCCAAGAAAATTGGCATTTCATTACCTACAAGACAGACAAAAAGAATTTGAGAAGTTTGATAAAACCCTCGTAGGCAAAATCACAAAGCCATATAGCTTTGTCAAATTCGATGGTATAATTGCAAACTTTAGTAGACAATACATTGATACAAGAACTCAAGCCAATCTAGCAAAACTTAAAATCAACAAGAAACAAGAGGTAAACATTGTAACAGAAGAAATGTCCAACATTTTAGAAAGGAGGAGAAATTCAGAAACAATGAGAAGACATGAGTTGAGAAAGACTATCATCAAATAA 540 0.3389 MVKVTIVGRVSDGLPLTQGLRYVNEENSYLSFYRQQAEFIVQEISKGTLTPSMMTILIDHYCFNFLVENGVVYIVLCESTYPRKLAFHYLQDRQKEFEKFDKTLVGKITKPYSFVKFDGIIANFSRQYIDTRTQANLAKLKINKKQEVNIVTEEMSNILERRRNSETMRRHELRKTIIK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05422 179 Gene3D Longin domain 1 129 - -
Trre1g05422 179 CDD Longin 5 128 IPR010908 -
Trre1g05422 179 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Trre1g05422 179 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Trre1g05422 179 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 172 IPR044565 GO:0005484|GO:0006888|GO:0006890
Trre1g05422 179 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Trre1g05422 179 SMART Longin_2 40 120 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05422 Trre-Chr1 59829421 59831838 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05422 K08517 - gmx:100781527 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05422 1 59829421 59831838 Trre1g05422 1 59829421 59831838 ECH