Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05412 ATGAATTCAATAGCCCTTTTAGGTTTAAGGAAAAGGGTTGTCAGCAAAATTTATCATTGTTTTGTTATTTCGCGGAGATTATGTAAGTTTGATGATGGTAATAATAATGAGTTTGATTGCATTGAAGAGCCTTTAAGAAAAATAGTTTCAGATTTTGATTGTAATTTGGATGAAAAGTTCCGTTTAAACGAGGATTCAAGTTTTGATCAAAAGCCGTTTTCACTTAGAAAAGGGTTCTTAGAAAGTGTTAAGTTAGATTCTAAGAGGGCTCTTGAGGTTCTTAGGCAAGATGGTCCTGGTCTTGATGCTAGGTTAGTTTTAAAGGAGTTGCGTATAAAACCTTCGGGGATTCTTGTCAGAGAGGTTCTCCTTGGAATTTTGAAGAGCGTAAATAGTGAGAATAAGACTAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGGTTACCGGCACACTGCGAATGCCTATCACTTGATTATGGATATATATGCTAAGTGCGAAGAGTTTAAGGCGTCATGGAGGTTGGTTGATGAGATGATTGAGAAAGGTTATCCGGTTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTAGTGAGGCGGGCTTGGCGAAGACATTGGTGGAGAGTTTCATAAAATCTAAGGCCTTTAACTTTTTGCCTTATAAGCATTCCTATAATGCAATTCTACACAGTTTTCTCGTATTAAACCAGTACAAATTGATTGAGTGGGTTTATGATCAGATGCGCGATGATTTTTCCCCAGATGTTTTAACTTATAATATTGTCTTGTATGCCAAGTACAGACTTGGAAAGGTGGATCAGTTCAACATACTGTTTGCTGAGATGGGTAGAAATGGATTTTCTCCAGATTTACATACCTACAACATTCTTCTTCATGCTCTCGGTAAAGGGGACAATCCACTTGGAGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGTATAGAGCCAACTGTACTTCATTTCACCACATTGATAGATGGACTCAGCAGAGCCGGGAATCTGGATGCTTGCAAATATTTTTTCGATGAAATGATAAAGAATGGGTGCATGCCAGATGTGGTGGCTTATACTGTTATGATAACGGGGTATGTAGTGGCTGGTGAGCTTGAGAAAGCACAAGAAATGTTTCAAGAGATGCTTTCTAACCAACAAGTCCCAAATGTTTTTACATACAATTCCATGATTCGGGGGTTATGCATGGCAGGAAAATTTGATGAAGCATGCTCAATGTTCAAGGAAATGGAAAGCAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGAGTTGTTTGCGGAGTGCTGGAAAGGTTGCTGAGGCACGTGAGGTGATAAGACAAATGATGGAGACGGGGAAGTATGCCCACTTACTTTCTAGATTCAAAGAGTATAAGATGTAG 1449 0.3872 MNSIALLGLRKRVVSKIYHCFVISRRLCKFDDGNNNEFDCIEEPLRKIVSDFDCNLDEKFRLNEDSSFDQKPFSLRKGFLESVKLDSKRALEVLRQDGPGLDARLVLKELRIKPSGILVREVLLGILKSVNSENKTRCAKLAYKFFVWCSQQEGYRHTANAYHLIMDIYAKCEEFKASWRLVDEMIEKGYPVTARTFNILIRTCSEAGLAKTLVESFIKSKAFNFLPYKHSYNAILHSFLVLNQYKLIEWVYDQMRDDFSPDVLTYNIVLYAKYRLGKVDQFNILFAEMGRNGFSPDLHTYNILLHALGKGDNPLGALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKAQEMFQEMLSNQQVPNVFTYNSMIRGLCMAGKFDEACSMFKEMESKGCSPNSVVYITLVSCLRSAGKVAEAREVIRQMMETGKYAHLLSRFKEYKM 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05412 482 Gene3D Tetratricopeptide repeat domain 353 481 IPR011990 GO:0005515
Trre1g05412 482 Gene3D Tetratricopeptide repeat domain 242 352 IPR011990 GO:0005515
Trre1g05412 482 Pfam PPR repeat family 261 309 IPR002885 -
Trre1g05412 482 Pfam PPR repeat family 401 448 IPR002885 -
Trre1g05412 482 Pfam PPR repeat family 331 378 IPR002885 -
Trre1g05412 482 Pfam PPR repeat family 160 204 IPR002885 -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Trre1g05412 482 SUPERFAMILY TPR-like 367 467 IPR011990 GO:0005515
Trre1g05412 482 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 276 468 - -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Trre1g05412 482 Gene3D Tetratricopeptide repeat domain 117 240 IPR011990 GO:0005515
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 336 368 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 439 468 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 369 402 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 404 438 IPR002885 -
Trre1g05412 482 NCBIfam pentatricopeptide repeat 161 193 IPR002885 -
Trre1g05412 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05412 Trre-Chr1 59754840 59756288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05412 286 475 Miscellaneous Gene Families AT4G11690 32.323 1.20e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05412 - - gmx:100792512 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05412 1 59754840 59756288 Trre1g05412 1 59754840 59756288 ECH