Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05406 ATGGAAAGATATTACAAATTTGTACTACTTTTTTTGGTAGTGTTGATTCAAGTTGCACAAATTTGTTTGTGTGCAAATTCAAATGTCCACTGCATTGAACAAGAGAGGCAAGCCCTTCTCGATTTCAAAGCATCTGTTGCACATGATTCACCAAACAATCTTTCATCATGGAAAGGCACTCACTGTTGCCAATGGGAAGGCATTGGCTGTGACAATGTTACTGGACATGTTGTCAAGCTTGATCTCATGAATCCTTGTTACCACCCAAACACTTGGTGGCAACGAAGAGAATATTTTGACAACTATTTGGAAAATGAATTATATGATATGACCTGTTCCAGTTTTCAACACAGAGTAGCTGCTACAAATGTGAGCTCATCTTTGTTGCAATTGGAACACTTGACTTATTTGGACTTGAGCGGAAATGATTTCAGTGGGAGTCCAATTCCCATGTTCATCGGTTCCATGGAACACCTTCGGTATCTCTCTCTCTCTGGAGCTGGTTTTAGTGGGAGGATTCCCACAAATCTCGGCAATCTCAAGAACCTACAATTTCTTGATCTCAGCTTCAATTCCTATTACTCTTTCTATCTGGAGTTGCAAATGAATGATGACATCAATTGGATATCAAAACTTCATTCACTCAGACACCTTGACTTGAGTTATGTTCGCCTCAATGAAACACGTAAGTTGTTCCAGGTACTCAATACACTTCCTTCCTTGTTATATCTTTCCTTGTATGGCTGTGATATTGACAATTCACTCATTCTCCAAAACATGTCATCTCTCGTCTATCTTGACCTCTCATTCAATGAGCTTCATGGTCCAATTCCCGAGTCTTTTCAAAACATGACTTCCATTGAATCTCTTTTCCTTTATGACAACTATTTTACTTCTATTCCGTCATGGTTCAATGACTTTGAGAAACTCACCCTTCTTGATCTTTCTTCCAATGGGCTTCATGGTCCAATTCCGGAAGTGTTTCGAAACATGACTTCCATTGAATCACTTTATCTTTCTTTCAACAGTTTCACTTTTATTCCAGCATGGTTTAGTGACTTTGAAAAACTAACCCTTCTTGACCTTACTTTCAATGACCTTCATGGTCCAATTCCGGAGGCTTTTCAAAACATGACTTCCCTTGAATCACTCTCCCTTTCTGACAATAGTTTAACTTCAATTCCACCATGGCTTGCTGAGTTGAAGAGAATTGTGCTCCTTGATCTTAGCGGCAATCAACTCACTCTTAAAGAATGTTTTCTATCATCAATCATAACAAACATGTGCCGCCTAAAACAATTAGATTTATCAATAAACAAGCTTCAAGGGGAATTAATGGGACACTTTGAATTATCTGGATGCAATACATATGATTTGGAGGTACTAAAGTTAAACTATAATGATATAGATCATCTGCCAACTTGGTTGGAGCAACTTGAAAATCTAAAGTACCTTGATTTTAGTTCAAATTCTCTCCATGGACCTATCCCATTATCTATAGTAAAGTTGTCAAAGTTGCAAAAGCTATATCTATCCAATAATGCATTGGAAGGGGTCATTTCGGGTCATATTGGACAACTTGTCAATTTAGGCCACATTGATCTTTCTTCTAATAAATTGAATGGTTCTATTCCTCAAAGCTTAGGGAAACTTGAAAATCTATATTCTCTCGATCTTTCAAATAATTCCTTTAGTGGGCTCATTCCTGAAAATCTTGGTCAACTTGTCAATTTAGAGAACTTAGATCTTTCTTCTAATAAATTTGATGGTTCAATTCCTCAAAGCCTAGGGAAGCTTGAAAATCTCAATTCTCTTTATCTTTCAAATAATTTCTTTAATGGCCTCATTCCTGAAAATCTTGGTCAACTTGTCAATTTAATTTACTTAGATCTTTCTTCTAATAAATTTGATGGTTCAATTCCTCAAAGCCTAGGGAAGCTTGAAAATCTCATTTTTCTTTATCTTTCAAATAATTTCTTTAATGGCCTCATTCCTGAAAATCTTAATCAACTTGTCAATTTACAGAACTTAGATCTTTCTTCTAATAAATTTGATGGTTCTATTCCAGATCAAATCCTAAGCAAACTTGAAAATCTTTATTTTCTTGATCTTTCAAACAACTCTTTTAATGGATCCATTCCTGAAAGTCTTGGTCAACTTGTCAATTTGAAGTATTTGGATATTTCTTCAAACAAGTTGGATGGGATAAAGTCTATGAAAAATGGTTGGTATTCAAATTTGCGGCATTTAAATCTCTCCCATAATCAAATCATTGGTTCACTTCCAAAAAATATTGGCCATGTAATGCTGTCATTGGGAAACTTGTTTCTAGAAAATAACCACTTAAATGGTTCAATACCAACCTCTTTGTGTCAATGTCAACTGCAAAACCTTGACCTTTCAAACAACAATTTGTCCGGTGAAATTCCAAATTGTTGGAAAGATAATCAAGAATTGTCTGAGATTAAATTGTCATCCAACAAACTAACTGGAGCATTTCCAAGCTCGTTCGGGAACCTTTCATCATTGGTTTGGTTGCATTTGAACAATAATAGCCTTCAAGGAGAGATTCCAGCGTCTTTCATCAATTTGAAGCAATTGTTGATTTTGGATCTTGGTGAGAATCAACTCTCTGGGAGTATACCATCATCATGGGAAGCAAACACTTTCCCTTTCCTGCAAGTTCTTAGACTGCGACAAAACATGTTGAATGGTAGTATTCCTTCACAACTATGCCAACTCAAATCGCTAAAAATTTTGGACCTTTCTAGAAACAAATTACATGGTTCAATACCTCGATGCATAGGAAACCTTGAAGGAATGAAATTGGAAAAATCATTATTATCTTCACCTCCTAGTTCTAATATTGCTAATGGTTGTCAATTAGTTGGAGGCAAGTATTCAAATTGTACTGCTCTAGCTCATGCATCTGAATGGTCTGATCAAGTTGTCACAGAAGTAGTGAAAGGAGTGGAACTTGAATGGGTGGAAGATGTTGCTGACAAGATTTATGTGGTAGCTGTAATTGAAGTGCCAAAGATAAAGAAGAAAATGAGGAGAAACCATGTCCATGGTTGA 3078 0.3616 MERYYKFVLLFLVVLIQVAQICLCANSNVHCIEQERQALLDFKASVAHDSPNNLSSWKGTHCCQWEGIGCDNVTGHVVKLDLMNPCYHPNTWWQRREYFDNYLENELYDMTCSSFQHRVAATNVSSSLLQLEHLTYLDLSGNDFSGSPIPMFIGSMEHLRYLSLSGAGFSGRIPTNLGNLKNLQFLDLSFNSYYSFYLELQMNDDINWISKLHSLRHLDLSYVRLNETRKLFQVLNTLPSLLYLSLYGCDIDNSLILQNMSSLVYLDLSFNELHGPIPESFQNMTSIESLFLYDNYFTSIPSWFNDFEKLTLLDLSSNGLHGPIPEVFRNMTSIESLYLSFNSFTFIPAWFSDFEKLTLLDLTFNDLHGPIPEAFQNMTSLESLSLSDNSLTSIPPWLAELKRIVLLDLSGNQLTLKECFLSSIITNMCRLKQLDLSINKLQGELMGHFELSGCNTYDLEVLKLNYNDIDHLPTWLEQLENLKYLDFSSNSLHGPIPLSIVKLSKLQKLYLSNNALEGVISGHIGQLVNLGHIDLSSNKLNGSIPQSLGKLENLYSLDLSNNSFSGLIPENLGQLVNLENLDLSSNKFDGSIPQSLGKLENLNSLYLSNNFFNGLIPENLGQLVNLIYLDLSSNKFDGSIPQSLGKLENLIFLYLSNNFFNGLIPENLNQLVNLQNLDLSSNKFDGSIPDQILSKLENLYFLDLSNNSFNGSIPESLGQLVNLKYLDISSNKLDGIKSMKNGWYSNLRHLNLSHNQIIGSLPKNIGHVMLSLGNLFLENNHLNGSIPTSLCQCQLQNLDLSNNNLSGEIPNCWKDNQELSEIKLSSNKLTGAFPSSFGNLSSLVWLHLNNNSLQGEIPASFINLKQLLILDLGENQLSGSIPSSWEANTFPFLQVLRLRQNMLNGSIPSQLCQLKSLKILDLSRNKLHGSIPRCIGNLEGMKLEKSLLSSPPSSNIANGCQLVGGKYSNCTALAHASEWSDQVVTEVVKGVELEWVEDVADKIYVVAVIEVPKIKKKMRRNHVHG 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05406 1025 Gene3D Ribonuclease Inhibitor 418 739 IPR032675 -
Trre1g05406 1025 SUPERFAMILY RNI-like 137 514 - -
Trre1g05406 1025 SMART LRR_typ_2 378 401 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 769 793 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 284 306 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 864 888 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 354 377 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 914 938 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 744 768 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 331 353 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 671 695 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 503 523 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 551 574 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 840 863 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 212 234 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 260 283 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 459 479 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 307 330 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 527 550 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 575 599 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 131 154 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 623 647 IPR003591 -
Trre1g05406 1025 SMART LRR_typ_2 696 720 IPR003591 -
Trre1g05406 1025 PRINTS Leucine-rich repeat signature 914 927 - -
Trre1g05406 1025 PRINTS Leucine-rich repeat signature 795 808 - -
Trre1g05406 1025 Pfam Leucine Rich Repeat 746 766 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine Rich Repeat 577 599 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine Rich Repeat 916 938 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine Rich Repeat 794 814 IPR001611 GO:0005515
Trre1g05406 1025 ProSiteProfiles Leucine-rich repeat profile. 380 402 IPR001611 GO:0005515
Trre1g05406 1025 SUPERFAMILY L domain-like 664 939 - -
Trre1g05406 1025 ProSiteProfiles Leucine-rich repeat profile. 746 768 IPR001611 GO:0005515
Trre1g05406 1025 SUPERFAMILY L domain-like 454 683 - -
Trre1g05406 1025 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Trre1g05406 1025 Gene3D Ribonuclease Inhibitor 232 326 IPR032675 -
Trre1g05406 1025 SMART LRR_sd22_2 527 556 - -
Trre1g05406 1025 SMART LRR_sd22_2 378 400 - -
Trre1g05406 1025 SMART LRR_sd22_2 575 604 - -
Trre1g05406 1025 SMART LRR_sd22_2 816 842 - -
Trre1g05406 1025 SMART LRR_sd22_2 260 286 - -
Trre1g05406 1025 SMART LRR_sd22_2 914 940 - -
Trre1g05406 1025 SMART LRR_sd22_2 307 333 - -
Trre1g05406 1025 SMART LRR_sd22_2 503 521 - -
Trre1g05406 1025 SMART LRR_sd22_2 479 500 - -
Trre1g05406 1025 SMART LRR_sd22_2 623 652 - -
Trre1g05406 1025 SMART LRR_sd22_2 720 738 - -
Trre1g05406 1025 SMART LRR_sd22_2 744 763 - -
Trre1g05406 1025 SMART LRR_sd22_2 671 701 - -
Trre1g05406 1025 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 739 955 - -
Trre1g05406 1025 Gene3D Ribonuclease Inhibitor 327 417 IPR032675 -
Trre1g05406 1025 PANTHER OS01G0750400 PROTEIN 124 192 - -
Trre1g05406 1025 FunFam GH01279p 212 423 - -
Trre1g05406 1025 FunFam Leucine-rich receptor-like protein kinase family protein 643 738 - -
Trre1g05406 1025 Pfam Leucine rich repeat 372 414 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 325 367 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 262 320 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 673 733 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 601 658 IPR001611 GO:0005515
Trre1g05406 1025 Pfam Leucine rich repeat 818 877 IPR001611 GO:0005515
Trre1g05406 1025 Gene3D Ribonuclease Inhibitor 740 973 IPR032675 -
Trre1g05406 1025 Gene3D Ribonuclease Inhibitor 31 231 IPR032675 -
Trre1g05406 1025 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 424 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05406 Trre-Chr1 59713809 59717429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05406 613 964 Receptor kinase-like Gene Family AT5G07280 35.955 1.49e-37 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05406 - - mtr:11429201 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05406 1 59713809 59717429 Trre1g05406 1 59713809 59717429 ECH