Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05402 ATGGCTGTTAATGATGAATGTAAATTGAAGTTTCTAGAATTAAAGGCAAAGAGAAACTATCGTTTTATTGTGTTTAAGATTGAGAACCAAGAAGTTGTATTGGAGAAACTTGGAGGTCCAGAAAAAACCTATGAAGACTTTAGTGCATCTCTTCCTGCTGATGAGTGTCGTTATGCTGTCTTTGATTTTGATTACACCACTCTTGAAAACTGCCAGAAAAGCAAGATTGTCTTCATTGCATGGTCTCCGGATATATCAAAGGTGAGACATAAGATGGTATATGCTAGCACCAAGGACAGATTCAAGAGGGAACTTGATGGCATTCAAGTTGAGTTGCAAGCAACAGATGCTAGTGAAATGAGCTTGGATATCATAAAAGCAAGAGCAGTATAA 393 0.374 MAVNDECKLKFLELKAKRNYRFIVFKIENQEVVLEKLGGPEKTYEDFSASLPADECRYAVFDFDYTTLENCQKSKIVFIAWSPDISKVRHKMVYASTKDRFKRELDGIQVELQATDASEMSLDIIKARAV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05402 130 ProSiteProfiles ADF-H domain profile. 1 130 IPR002108 GO:0003779
Trre1g05402 130 Gene3D Severin 1 130 IPR029006 -
Trre1g05402 130 CDD ADF_cofilin_like 1 129 IPR017904 GO:0015629|GO:0030042
Trre1g05402 130 PANTHER COFILIN-RELATED 1 129 IPR017904 GO:0015629|GO:0030042
Trre1g05402 130 SMART adf_2 5 130 IPR002108 GO:0003779
Trre1g05402 130 Pfam Cofilin/tropomyosin-type actin-binding protein 7 127 IPR002108 GO:0003779
Trre1g05402 130 SUPERFAMILY Actin depolymerizing proteins 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05402 Trre-Chr1 59677342 59678513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05402 - K05765 tpra:123911604 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05402 1 59677342 59678513 Trre1g05402 1 59677342 59678513 ECH