Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05394 ATGGTTTCGCAGTGGGGAATCAAATTCGCCGTTCACCTCATCACCAACCACTTCGGCAAAATCGTCGCTAATGTTTGCGAAAAACTACTTAACCAAGGACCTCTCACTTTGGAACTCATTGTTCGCTACACTGAACTTTCAACGCGGGATGTTAAGAATTCATTGCTTGTATTAATTCAACATAATTGCGTTCAGCCATTCAATGTTCAAGATCAATCGAAAGTCGGGACAACACAATACTTGGTGTTGTTTGATAACATATTACATCGGCAGAGATTTCCAAAATTCATGGAGATAGTGTCGCAGGAACTTGGTGATAAATGTGTACAGATTCTGGAAGGATTGCTCCGCGATGGTAGACTAAATTTGAAACAAATGATTGACAGAGCAAGTCAAGAAAATGCAGAGTCTGAAGATGCTGTACGAGAGAGCCTTTGTAAACTTCTGACGGCTCGATATGTTGAACGCTGTCCAGTCCCTGAGGTTTCGGTAGTTGTTGAAGAAAAAAATGATAAAAAGAAACGTGGTTCTAAGGCTGCCCAGGAATTCAAAGCACCACTGACAACAGAACAACGTGTTATAGAAACTGCAACGCATGGGGATATGGCCAGATTTTCACTCACTGCAGATACAGGATATAATAGTGACGAAGAAACAAAGCCATCTGATACGAGTGTTGCAGAAAATGTTGCAAAAGAGGAGTTAACTCTTTGGCGTGCAAATTTTGAGGAGTTCATACGTTATCTTAGGGATAAGGCATTGATTGATAATGTAAGATCACGAATGGATGATGGAGCTGCTACCGTCTTACGTGCAATATTGGAGGCAACAAGAAATAAGGAGAAACAAGTGAAAATAGAAAAATCAGTTCCCTTACCACTGGATACAATTTTCACAGAGGTGATGAAGACTGAAACTGGCCGAACTATGACCATGGATCGTGTTAAAGCTTCTCTTGTTCAGTTGGGTTGTTCAAATCAGATGTTATATGAATATATTATTGATTTAGAGCACATTATTCATTGGGCTCGAAATGAAGAGGTTGAGTCAATTGTGTTAAAAAGGTATGGAAGGGATGCCTACCGGATGTTCAGGTATCTGTCAAAGGGAAAACAGTTTCGTCCGACAGATAAGATTGCAGATGATACTCTTGTTGAGAAAAGGGAAGCTCCAAAGTTACTGTTCAAGTTATGGAAGGAAAACTACTTGCAAATGGAGAAATTATATGTCACACTCGCCACGGTAAATGCTAGGTCAACACCAATTTTAATGTGGAAAGTAAATCAGCCTCTGCTTTGGGAACATGTTCTGGACGAGCTGTATCACGGTGCCTTAAATTTGAAACTAAGAATAGCTTTTGAGCAGGACAATAATGAAGAGATTATAAATATGTCCAAGAAGAGGATTAACGAATCCGAGCCACTGCTGAAGAAACACACACGGCTACAAAATGTTCTTTTACTCTTGGGATCATCATTGATGAAACTTGATGATACTATTATGCTTTTCAATGACTTCTGA 1521 0.3971 MVSQWGIKFAVHLITNHFGKIVANVCEKLLNQGPLTLELIVRYTELSTRDVKNSLLVLIQHNCVQPFNVQDQSKVGTTQYLVLFDNILHRQRFPKFMEIVSQELGDKCVQILEGLLRDGRLNLKQMIDRASQENAESEDAVRESLCKLLTARYVERCPVPEVSVVVEEKNDKKKRGSKAAQEFKAPLTTEQRVIETATHGDMARFSLTADTGYNSDEETKPSDTSVAENVAKEELTLWRANFEEFIRYLRDKALIDNVRSRMDDGAATVLRAILEATRNKEKQVKIEKSVPLPLDTIFTEVMKTETGRTMTMDRVKASLVQLGCSNQMLYEYIIDLEHIIHWARNEEVESIVLKRYGRDAYRMFRYLSKGKQFRPTDKIADDTLVEKREAPKLLFKLWKENYLQMEKLYVTLATVNARSTPILMWKVNQPLLWEHVLDELYHGALNLKLRIAFEQDNNEEIINMSKKRINESEPLLKKHTRLQNVLLLLGSSLMKLDDTIMLFNDF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05394 506 FunFam DNA-directed RNA polymerase III subunit RPC3 2 82 - -
Trre1g05394 506 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 506 IPR039748 GO:0003697|GO:0005666
Trre1g05394 506 Gene3D - 2 81 IPR036388 -
Trre1g05394 506 Coils Coil 120 143 - -
Trre1g05394 506 Gene3D - 336 428 IPR036388 -
Trre1g05394 506 Gene3D - 84 165 IPR036388 -
Trre1g05394 506 Gene3D - 241 332 IPR036388 -
Trre1g05394 506 Pfam RNA polymerase III subunit RPC82 144 312 IPR008806 GO:0003677|GO:0006351
Trre1g05394 506 FunFam DNA-directed RNA polymerase III subunit rpc3 84 164 - -
Trre1g05394 506 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 65 IPR013197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05394 Trre-Chr1 59632311 59640347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05394 K03023 - gmx:100784750 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05394 1 59632311 59640347 Trre1g05394 1 59632311 59640347 ECH