Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05372 ATGTGGCCATTCAACAGGAAAGGGGTCTCTGGATTTTCAGGAAGTTCAACTGCTGAACAAGTTACGAATGGAATCGATGCTACTGGTTTCACTGCTATTGTCACTGGAGCATCCAGCGGTATTGGTGCTGAGACTACGCGTGTTCTTGCTTTGCGCGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTGCTGCTAATGATATCAAAGAAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTCGCATCAGAATTTAAGTCCTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAGTCATGGCATGCCCTTTCACGCTTTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCATTTAGGTCATTTTCTCTTGACGAATCTTTTGTTGGACACTTTGAAGAAAACAGCACGTGAAAGTCAGAAAGAAGGAAGAATTGTTAATGTCTCTTCAGGTGCTCACCAATTTGCGTATTCTGAAGGAATCCGTTTTGACAAAATTAATGAAAAATCAAGTTACAGCAACTGGCGAGCATATGGACAGTCAAAACTTGCTAACATTTTACATGCCAATGAACTTGCAAGACAATTCAAAGATGATGGGGTGAATATCATTGCAAATTCTATTCATCCAGGAGCCATTGTCACCAATCTTTACCGTCACACCAGTATAATCGATGGTATAGTAAATGCGGTTGGCAAACTTGTGATGAAAAATGTTCAGCAGGGAGCAGCTACAACATGTTATGTAGCATTGCACACACAAGTGAATGGAGTTGGTGGTGAATATTTTGTTGACAGTAATATAGCCAAAACTAGTTCCCAGGGAAGGGACACTGATTTGGCTAAGAAACTATGGGATTTCAGCATGGATTTGATTAAGGACAAATAG 948 0.4019 MWPFNRKGVSGFSGSSTAEQVTNGIDATGFTAIVTGASSGIGAETTRVLALRGVHVIMAVRNKVAANDIKEAILKEIPSAKIDVMELDLSSLESVKKFASEFKSSGLPLNILINNAGVMACPFTLSKDNIELQFATNHLGHFLLTNLLLDTLKKTARESQKEGRIVNVSSGAHQFAYSEGIRFDKINEKSSYSNWRAYGQSKLANILHANELARQFKDDGVNIIANSIHPGAIVTNLYRHTSIIDGIVNAVGKLVMKNVQQGAATTCYVALHTQVNGVGGEYFVDSNIAKTSSQGRDTDLAKKLWDFSMDLIKDK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05372 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Trre1g05372 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Trre1g05372 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Trre1g05372 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Trre1g05372 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Trre1g05372 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 286 IPR036291 -
Trre1g05372 315 Gene3D - 20 315 - -
Trre1g05372 315 PANTHER RETINOL DEHYDROGENASE 10 313 - -
Trre1g05372 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Trre1g05372 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Trre1g05372 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Trre1g05372 315 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Trre1g05372 315 Pfam short chain dehydrogenase 31 178 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05372 Trre-Chr1 59453808 59459904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05372 33 183 Acyl Lipid Metabolism Gene Families AT1G62610 29.630 1.56e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05372 - - gmx:100796920 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05372 1 59453808 59459904 Trre1g05372 1 59453808 59459904 ECH