Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05356 ATGATAATGAAGAGCCATACATTCCTAAGGGTCATTTTTCTTTTGATGTTTCTTGGGTGCCTAACGGTTTGGATCTTGTTGCCAACAAAGATCTACAAAAACACATGGACTCCCAAACTTAAAAACAATCTAAATTCTACATATTTCAGAGGGCAAGGAGTAAATCTGCTGCTTTTCACATTTCCTATGATGTTCATTGGAGCTCTTGGTTGTATTTATCTCCATCTTCACCGGGAAAAAATAACACAAAAGTTACCCTCCAAAAGTGGAGCTCTAAAAAGATGTTTATGTTACCTTAGACGACCATTCTTGGTGATGTCTCCAATTGGAATTGTTTCATCTATGGAGCTTATTTTTGCATTCATGTTTGTTGTACTTTTGATATGGTCCCTTTCCAATTACTTGCATATTAGTTTTGGTCACCTCCATATGCACAAACAAGGCGAGAAAGTATGGGAAGCAAAGTTCAGGAGTGTATCTTTAAGACTTGGGTACATAGGAAACATATGTTGGGCATTTTTGTTCTTTCCAGTCACAAGAGGGTCTTCTATTCTGCCTCTTGTTGGTCTCACATCTGAATCAAGCATCAAATACCATATTTGGCTTGGACATTTATCTATGGTTCTTTTTGCTGCACATACCATAGGTTTCTTCATCTATTGGGCCATCACCAACCAAATGGTTGAGGCATTAGAGTGGAGCAAGACATATGTATCAAATGTAGGTGGGGAGATTGCAAGTTTAATAGCATTAGCAATGTGGATAACAAGTATGCCACGCATAAGACGTAAGATGTATGAAGTATTCTTCTACACTCACCATCTCTACATTCTCTATATCTTATTCTATGCCATCCATGTTGGAGTTGAATACATGTGCATGATTGCTCCTGGGATTTTCCTATTCCTCATTGATAGACATCTTAGATTCTTGCAATCTCGACAAAATGCTCGGTTACTATCAGCTCGTCTTTTACCTTGTGATGCACTTGAGCTCACCTTCTCCAAGAATCCTAGTTTATCCTATAACCCCACAAGCTTGGTGTTCATAAATGTTCCAAAGGTTTCCAAGCTGCAATGGCACCCTTTTACAATGTCATCTAGTAGTAATTTGGAGATTAATTCTCTGAGTGTTACCATAAAAAATGTGGGTATCTGGTCAAACAAGCTTTATCAGGAACTTTCTTCAACAACTTTGGATCATCTTAGTGTTTCAGTTGAAGGACCCTATGGACCACATACTACACAATTTCTAAGGCATGAACAGATTGTGATGATAAGTGGTGGAAGTGGCATAACTCCTTTCATATCAATAATCAGAGATCTCATATTTCAAAGCCAAAGACAAGAATTCCAACCTCCAAAACTTCTACTTGTTTGTATTTTCAAAAACTATGTTGATCTAGCCATGTTAGATCTTATACTTCCTGCATCTGGTTCAACAACTCAAATCTCAAACCTTCAACTACAAATTGAAGCTTACATCACAAGAGAAAAAGAAGAACCACCAAGAGATACTCAGAAACATATTCAAACAATATGGTTTAAACCAAACCTCTTAGACTCTCCTATCTCAGCTATATTAGGCCCAAATAACTGGTTATGGCTTAGTGCTATAATCACATCATCTTTCATCATGTTTCTCCTCATGTTAGGGATTGTTACTCGTTACTATATTTATCCAATTGAAAATAACTCAGATGAAGTTTATAATTGGACATTTAAGGTTATGTGGTACATGTTTCTACTTTGTGCATGCATATGTTTATGTTCTAGTGCAATTTTTCTTTGGTGGAAGAGACAAAATAACACCTTAGAAAATAAGCAAATAATGAATGTAGAAGTTTCAACACCAACAAGATCACCAGGGTCATGGATTTATGGATCAGAAAGAGAACTTGAAAGTCTTCCTCATCAATCTTTAGTGCAAGCTACCAATGTACATTTTGGTGCAAGACCTGATCTCAAGAAAATTCTGTTTGAGTGTGAAGGCAAAGATGTTGGAGTTATGGTTTGTGGTCCAAGAAAATTGAGACATGAAGTTGCTAAAATATGTGCTTCTGGTTTGGCTGATAATCTTCAATTTGAATCCATCAGCTTTAATTGGTGA 2109 0.3675 MIMKSHTFLRVIFLLMFLGCLTVWILLPTKIYKNTWTPKLKNNLNSTYFRGQGVNLLLFTFPMMFIGALGCIYLHLHREKITQKLPSKSGALKRCLCYLRRPFLVMSPIGIVSSMELIFAFMFVVLLIWSLSNYLHISFGHLHMHKQGEKVWEAKFRSVSLRLGYIGNICWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSMVLFAAHTIGFFIYWAITNQMVEALEWSKTYVSNVGGEIASLIALAMWITSMPRIRRKMYEVFFYTHHLYILYILFYAIHVGVEYMCMIAPGIFLFLIDRHLRFLQSRQNARLLSARLLPCDALELTFSKNPSLSYNPTSLVFINVPKVSKLQWHPFTMSSSSNLEINSLSVTIKNVGIWSNKLYQELSSTTLDHLSVSVEGPYGPHTTQFLRHEQIVMISGGSGITPFISIIRDLIFQSQRQEFQPPKLLLVCIFKNYVDLAMLDLILPASGSTTQISNLQLQIEAYITREKEEPPRDTQKHIQTIWFKPNLLDSPISAILGPNNWLWLSAIITSSFIMFLLMLGIVTRYYIYPIENNSDEVYNWTFKVMWYMFLLCACICLCSSAIFLWWKRQNNTLENKQIMNVEVSTPTRSPGSWIYGSERELESLPHQSLVQATNVHFGARPDLKKILFECEGKDVGVMVCGPRKLRHEVAKICASGLADNLQFESISFNW 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05356 702 Gene3D Translation factors 310 408 - -
Trre1g05356 702 FunFam Ferric reduction oxidase 3 409 527 - -
Trre1g05356 702 SFLD Ferric reductase subgroup (FRE) 11 702 - -
Trre1g05356 702 Pfam Ferric reductase like transmembrane component 164 282 IPR013130 -
Trre1g05356 702 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 312 416 IPR017927 GO:0016491
Trre1g05356 702 Gene3D - 594 701 IPR039261 -
Trre1g05356 702 SUPERFAMILY Riboflavin synthase domain-like 309 394 IPR017938 -
Trre1g05356 702 FunFam Ferric reduction oxidase 5 591 701 - -
Trre1g05356 702 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 404 478 IPR039261 -
Trre1g05356 702 Gene3D - 409 527 IPR039261 -
Trre1g05356 702 SFLD Ferric Reductase Domain 28 702 - -
Trre1g05356 702 Pfam Ferric reductase NAD binding domain 420 686 IPR013121 GO:0016491
Trre1g05356 702 PANTHER NADPH OXIDASE 15 700 - -
Trre1g05356 702 Pfam FAD-binding domain 316 413 IPR013112 GO:0016491
Trre1g05356 702 PRINTS Cytochrome B-245 heavy chain signature 241 264 IPR000778 GO:0016020|GO:0016491
Trre1g05356 702 PRINTS Cytochrome B-245 heavy chain signature 618 636 IPR000778 GO:0016020|GO:0016491
Trre1g05356 702 PRINTS Cytochrome B-245 heavy chain signature 266 286 IPR000778 GO:0016020|GO:0016491
Trre1g05356 702 CDD NOX_Duox_like_FAD_NADP 319 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05356 Trre-Chr1 59364119 59372768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05356 7 702 Miscellaneous Gene Families AT5G23980 58.689 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05356 K00521 - gmx:112998154 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05356 1 59364119 59372768 Trre1g05356 1 59364119 59372768 ECH