Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05312 ATGGAGAAGATGCATTACGCTGAAGAATTAGTGCGAGAATTTCTCGTATTTCGAGGATTCACCAACACACTCGAAGCTTACGAAACTGAATTACGAACCGACGTTGGAAAAGGTTTTCAGGTTGATAAAATTCTTGATCTAATTTTCTCCTTATACATTCCAAAGTTTCAGATCGATAAATTGGTAGCGCTTCTCGGTTTCTTCAAACACTATATATCTTCATCTTCTGAAACCACACTCGTTTCAACTTTCTCTAAATTGGAAGCTTCTGTTCTACGCTTCTATGTTGTTCATGCTTTGCAATCCAATCGGAGGGATAAGGTTGTTGAATTTTTCACTGTTCATGGTCCTGATTTGTTGCAGAGTTCTCAGGATGATTGGACTCAATGGTTTGCAATTCCTTATGTGAAGAATCCACAATTGGATCCCGAATTTCGGATATTTTTTTCTAAGGAGTGGTATCAGGCTTTGCATCTTTCTATTAGTTCAGAGATGAATGCTACCAACCTACTCAAAAGTGATATTGTACATCTAAATATCAAATTGTCAGAACTTCAGGCTTTACTCAATGAGAAAGAGGCACAATTAAGGCGGTTTAGAAGTATGGAAGGAAGTATTAGTTCACCACCAAGCAATTTGCGCGAAGACAGTACTCATATGTCAAAAGATTCTCCAGAGATTGAGCAAGATTTAGTTGTGGGTGAACCTGGAAATGTTCAGTCCGAGTTTATCCGCTCCAAGTCTGGCGACGATTCAACTTTCATATTGAATGACTATCTGGGAAATGGCAGAGCAGGCAATACCACTCTAAAAGAAAACGATGGGGAAGTGTCTGGGGAAGAAGACTTTGCTGAGGTCGACGTAGAGCATCAGGAGACATTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCGTCTGGAAACAATATTGCAAGTGCTTCTTTAGATGGAACTGCCAGGATATGGACATATGATGCATCAACTCCGGCGTCTAGAAACGCAACCATATATTGTGGCACTGAAATTTTGTCACTTGACTGGGAATGCAAATCAGACCGCTTGCTTCTAATAGGTACATCCGATGGGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAACACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGGTCTAGTTCCAACTATTTTGACAACCTGGGTTTCGCTTCACTGACTGTATGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGACCCACCAGCAATTACTTCTCTATGTTTCAATCACAACGGGAAGATTTTAGCAGCATCTGCTGTTGATGGAATGATTCACATGTTTGTTCTATTCTTTTTGGACCAGATGAGACTAGCATTTTTAGCTTCGGCTCTGATGGGAAGGCAAATTTTTGAGTGGAGCTTGCAAAATCAAGGTCAGATCTTGTGGTCAAGAGATTGTAGTAGGTTTTGTTACCCTGTCAACGGTTCAAATTATTACAGACAGGATATGGCATTAGATGCAAATGGAAGAAGACTCTTGGTAACATCCAGTTCAGTTAGAGCACCCATATATCAGGTTCAGGATCATTTGAATGGTTGGAGAACACTTTCTCACAGTGCTCCTGTTACTGCTGTAGATTGGCATCCAACCTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACGTCATTATTATCATAA 1785 0.4134 MEKMHYAEELVREFLVFRGFTNTLEAYETELRTDVGKGFQVDKILDLIFSLYIPKFQIDKLVALLGFFKHYISSSSETTLVSTFSKLEASVLRFYVVHALQSNRRDKVVEFFTVHGPDLLQSSQDDWTQWFAIPYVKNPQLDPEFRIFFSKEWYQALHLSISSEMNATNLLKSDIVHLNIKLSELQALLNEKEAQLRRFRSMEGSISSPPSNLREDSTHMSKDSPEIEQDLVVGEPGNVQSEFIRSKSGDDSTFILNDYLGNGRAGNTTLKENDGEVSGEEDFAEVDVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSSSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFVLFFLDQMRLAFLASALMGRQIFEWSLQNQGQILWSRDCSRFCYPVNGSNYYRQDMALDANGRRLLVTSSSVRAPIYQVQDHLNGWRTLSHSAPVTAVDWHPTLPIFLTGSADNSVRVTSLLS 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05312 594 Coils Coil 175 202 - -
Trre1g05312 594 MobiDBLite consensus disorder prediction 201 225 - -
Trre1g05312 594 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Trre1g05312 594 Pfam WD domain, G-beta repeat 447 470 IPR001680 GO:0005515
Trre1g05312 594 Pfam WD domain, G-beta repeat 559 589 IPR001680 GO:0005515
Trre1g05312 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 559 594 - -
Trre1g05312 594 PANTHER OS05G0299300 PROTEIN 1 471 - -
Trre1g05312 594 Gene3D - 479 594 IPR015943 GO:0005515
Trre1g05312 594 Gene3D - 279 476 IPR015943 GO:0005515
Trre1g05312 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Trre1g05312 594 MobiDBLite consensus disorder prediction 201 215 - -
Trre1g05312 594 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 594 IPR001680 GO:0005515
Trre1g05312 594 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 325 - -
Trre1g05312 594 SMART WD40_4 287 326 IPR001680 GO:0005515
Trre1g05312 594 SMART WD40_4 553 591 IPR001680 GO:0005515
Trre1g05312 594 SMART WD40_4 431 472 IPR001680 GO:0005515
Trre1g05312 594 SMART WD40_4 332 371 IPR001680 GO:0005515
Trre1g05312 594 SUPERFAMILY WD40 repeat-like 286 589 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05312 Trre-Chr1 59027567 59032667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05312 K24760 - gmx:100795332 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05312 1 59027567 59032667 Trre1g05312 1 59027567 59032667 ECH