Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05308 ATGGACACCGACGGATTATCACTAATCTGTAGCGGTCTCGGAGCAATTGAAGAAGACGATGAAGGAAATCGAATCGGTTACTCCAAGGGCGAATATTGTCTTGATAATTTGAAAGATTTGCTGAGGTTTTTGAGACGTGATGACCCGCAAACACGTGATGTGTTCAAGCAAGTGTGTAAATGGAATATTGTTTCGAAGGATTTGGTACCGATTATTGAGCACTACCATGAAGATCGCAGCACGCTTCTCAATGCAGTTAAGGTTTTGGTGTTCCTTACAATGCCGATTGAGCCTGGTTCCACTGATATATCTCAGCAGTTGGAGTATCTGTGGGATTTGAAGTCTGCAGTGACTAACAGTGATGTAGTTACTGTGATAGTTTCGATTCTAGAAAAACCACTTGAGAATTTGGAACTTAATGCATTCACGGAGGATGATTGGAAATTGGTACAACTGGTGTTTACATTATTTAGAAACATCCTTGCCGTTCAAGAAATTCCATTGCATCAGAAATCAGCGGGATCTGCTAGTCATTTTTTAGCGCTGAGAGATAAATTTCTGGAACTTTTGTTCCGTGAAAATGTGATGGATATAATTTTGGTTGTATCTCAAAATGTTGGTAGTTCTAATGTTTATCTCCGTCAGGATAACTTGCTTCTATTGGAAATTTTCCATTATATTTTTATGGGTCAGGATCCAGAGTTGATTGTTCGGGGCCATTTGAATGGATTGAAGGTTGACAAAGACTCCCAAGCTTCTCTTGATAGTCTCCAGTCCATCATGGAGGAAGAAAAGAAGAAAAGAATTATTAGCAGGGTTGGCAATATCAGTCGGCATTCACAATTCAGTGGAACATTTGCAAGGGTTACCATGGACGGTTCTAAAGCTGTAATTAAGGGAAATCCTAGTTCTTCTCATAATATGCATCTTAAATCACAAAATGTTACACGGGGTCGGGTAAAAAAAATTGCATGGGATCATCCAAGGTTGCCTTCAACAAAAGATAAGATCTTGGAGTTGCTTCGTGGATTTGTAGATCAGTTTCTTTCTGGGGCATACAACGTTTTGATGCGATCTGTCCGTGAAGATATTGTAAAGGAACATCCTTCAGTTCAAAAAAGTGACGTCGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTCATTTCAGTTTTACAAGTATTCAACTTCAAAGACCAAGGAAGACATGGACACATTTGGGGATAATGATGCTGATGCTCCGGATTTCAGTGGTAAAATATGTGGCCCAGTTGAAGCATCCTTGAATGAGTCAATGTTTCAATTAGTCATTTCAAAGTGGCGGCAGGCCTATGATGGTCTAAAGGAGACCAATGACTACAAGTTTCTATCTGCAGCTGGTTCTCTTTTGAAAAACATGATTCGTATGCTGGATTTAGTACTTAAGATGCTGCCAGAAGACTCTAAGGAGCCACAAACAGCTCGCATTCTTCTTTACAAGTTATTTTATGATCAGACTGAAGAAGGGATGACTCAATTCCTCTTGAATTTGATCAAAACTTTTGACACACACAAACAATGCAAAAGTGATCTTGCAGATTTGGTTGAAATCATTTGCAAGGTTGTAAAGTTAATGGATTATCTCCAGTCTCGAGGAACATTGAGGGTGTCAAAAAAAGCAAGGAAATTGAAAAAGAAGATTTCCAATGTAACAGAATCTGAGAATAAACCAGCTGGAGATAATTCATGCATTCAAAAAGAAGCTGGCGTTTCTATTGACAATCAATTAGCTGAAAATCAGTTGCTGCAGAAGGAATCTCTACCGAATGCAATTTCCACTGAGCAAGAAGACGTCCCTGATGATAATGATCATCAAAATCTCGAGAAAGATGTGAACTCCCAAGTTTGTTTGGAATCAATGGAAAACGCAAATCTTGATGATAATGGACATGGAAATGTCAAGGAAGATGTGAACTCTGATGTTGTGATGGAAACAGTGAAAAACACAAATCTTGATGATAATGAACATGAAAATGTCGAGGAAGATGTGAACTCCCAAGTTGGTTCAGAACCAATGAAAAAGACAAATCCTGAACATCCTAACGAGGATATGTTGGATGACACTGGTGATTTTTCTGAAGATGAGCAAATAAATGCAATTAGTGAAGTTGATTTCAATGTTTCAACGCTCGTCTCTGCCTTTGCAAATCACAGTATCATTCAGAAATTATGTTGGTTGCTCAAGTTTTATAAAAGCAATTCCCTTGCTATAAACCATTACATAATAAGCATGTTGCGAAGAATTAGTGATGAGCTTGAACTCCATCCCATGCTCTACCAGTTGTCGCTGCTCACAATTTTTTATGACATCCTTGTTGAACAAAAATCATGCCCCTGCGAGGAATATGCAACTATTGTTGATTTCCTGAACAGTTTGGTGAGAAAGATGCTAAAGAAAATGAAAAAACAGCCCCTCCTATTTGTTGAAGTCCTTTTCTGGAAGACCCGACGGGAATGTCATTACATCAATGCAGAATATATGTTGGGTGAGCTTGGTCATTTGAAAAATGAAAGTAGAAATTGGAATGATACTCAAGGAGATGGAGAAATGGGTTCATCCCCAGTGAAGGCGTGGACTCGTAGAAGCATAGCTGATGCACTTGGTGACGATGAAGCGGATGTTGTGATCTCTCATGACTCAAGATATCAAAACTATGGAGAAAAGCTTGATGATGTTGATGGCTTTACTTCTACCTCAGGCAGTAAGAATAGCGGAGATGATAATGATGGGGAGCCATGGTTGGAAGATGAATCTCAAACAGCTCCAAGGAGGAAAAAAAACCTTATTCTAGATGCAGAATTGGAGATACAAATTAAGGATCTCTATGAGAAATTCAAAGATGACCGAAATTGCAGTCGACGTATTGCTGAAGTGCTAGATCCAGATGGTAAAATTTCTCCAGCTCAAATATCAAATAAATTGAAAAAACTAGGGCTAACAATTGCATCAAGGAAAAAGAAGGGTGATGATGAAACTTTTTCAACAAGCCCTAATCAAAAAAGAAAAAGAGTCAGTGCTTTCAATGAAGATCAGGAAGCTCTTATCAAAGTTCTATATGAGCAATTCAAGGACCATAGAAGATGTAGCTATATGATAGCCAATGCACTCGACGAGGATGGTAAATTTACACCTGCCCAAGTCTCTCGAAAACTTAAGCAACTTGGCTTATGTGTTCCTCAAAAGAGTTTTAGAGGAAAAAACAACCAAAAGAATGAGGATCTTATGGATTGTTCAGAGGATAGAATGAATGAATCTGATGATGAAACATTGATATCATTGATAGAAAGGAAAAAAGTGAAGAATAAAAAAGAATCAAGCGAACAGTTACAAGAACAGACTGGTGAGGAGAAATTATCAAAAGATGATTCTGATGATGAAATACTCGGCTCTATCCTCAAGAAGAAACTGAAGAACAGAAAAGAATCAAGCGGACAGTTACAAGAACAGACCAGTGAGGATAAGTTGTCAAACAATGATTCTGATGATGAAATACTCGGCTCTATCCTCAAGAAAAAAAAGAATAGCTTGGTATCCAATGAACATTTACATGAAAACATCAATGAGGATGAATTGTCTAGAGACGGTTCTGACGATGAAATGCTTCAATCTGCACCGAATGAAAATCAAGTAGGTTTCATGAGTTCCAACCAAGTAGAATATAAGCAAGTGGATCCTGACTTGGAAGATTCAGATGATGAAGTGGCTGTTAATGTACTTCCTGAAAATGCTGTATCCAGAAGGAAGTTAAGAATGGTGATTGATCTTGAGGATGATGACTAA 3819 0.3823 MDTDGLSLICSGLGAIEEDDEGNRIGYSKGEYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVSKDLVPIIEHYHEDRSTLLNAVKVLVFLTMPIEPGSTDISQQLEYLWDLKSAVTNSDVVTVIVSILEKPLENLELNAFTEDDWKLVQLVFTLFRNILAVQEIPLHQKSAGSASHFLALRDKFLELLFRENVMDIILVVSQNVGSSNVYLRQDNLLLLEIFHYIFMGQDPELIVRGHLNGLKVDKDSQASLDSLQSIMEEEKKKRIISRVGNISRHSQFSGTFARVTMDGSKAVIKGNPSSSHNMHLKSQNVTRGRVKKIAWDHPRLPSTKDKILELLRGFVDQFLSGAYNVLMRSVREDIVKEHPSVQKSDVVVFFQVAEFVTSFQFYKYSTSKTKEDMDTFGDNDADAPDFSGKICGPVEASLNESMFQLVISKWRQAYDGLKETNDYKFLSAAGSLLKNMIRMLDLVLKMLPEDSKEPQTARILLYKLFYDQTEEGMTQFLLNLIKTFDTHKQCKSDLADLVEIICKVVKLMDYLQSRGTLRVSKKARKLKKKISNVTESENKPAGDNSCIQKEAGVSIDNQLAENQLLQKESLPNAISTEQEDVPDDNDHQNLEKDVNSQVCLESMENANLDDNGHGNVKEDVNSDVVMETVKNTNLDDNEHENVEEDVNSQVGSEPMKKTNPEHPNEDMLDDTGDFSEDEQINAISEVDFNVSTLVSAFANHSIIQKLCWLLKFYKSNSLAINHYIISMLRRISDELELHPMLYQLSLLTIFYDILVEQKSCPCEEYATIVDFLNSLVRKMLKKMKKQPLLFVEVLFWKTRRECHYINAEYMLGELGHLKNESRNWNDTQGDGEMGSSPVKAWTRRSIADALGDDEADVVISHDSRYQNYGEKLDDVDGFTSTSGSKNSGDDNDGEPWLEDESQTAPRRKKNLILDAELEIQIKDLYEKFKDDRNCSRRIAEVLDPDGKISPAQISNKLKKLGLTIASRKKKGDDETFSTSPNQKRKRVSAFNEDQEALIKVLYEQFKDHRRCSYMIANALDEDGKFTPAQVSRKLKQLGLCVPQKSFRGKNNQKNEDLMDCSEDRMNESDDETLISLIERKKVKNKKESSEQLQEQTGEEKLSKDDSDDEILGSILKKKLKNRKESSGQLQEQTSEDKLSNNDSDDEILGSILKKKKNSLVSNEHLHENINEDELSRDGSDDEMLQSAPNENQVGFMSSNQVEYKQVDPDLEDSDDEVAVNVLPENAVSRRKLRMVIDLEDDD 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05308 1272 Pfam Timeless protein 27 287 IPR006906 -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 669 695 - -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 1167 1203 - -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 901 935 - -
Trre1g05308 1272 PANTHER TIMEOUT/TIMELESS-2 2 1272 IPR044998 -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 1212 1227 - -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 1113 1137 - -
Trre1g05308 1272 MobiDBLite consensus disorder prediction 1151 1227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05308 Trre-Chr1 59014637 59023968 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05308 K10997 - gmx:100796385 1677.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05308 1 59014637 59023968 Trre1g05308 1 59014637 59023968 ECH