Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05304 ATGGCAAAAAACTCTAACACTTTCTTGTCTCATATCTTTCTCTTGTTCCTAACTTTTGTTGCAACTTCCCATGCTGGTGGCATAGCAATCTATTGGGGCCAAAACGGTAACGAGGGTACGTTATCCGAAGCATGTGCAACCGGAAAATACACCCATGTTATCATAGCGTTTCTCAACAAATTTGGTAACGATCAAACCCCTGAAATGAATCTCGCAAGTCACTGCAACCCGTCAGTTCCAAATTCATGCACAAAATTCAGCTCGGAAATTAAAGATTGCCAAAGTAAAGGAATCATAGTTTTAGTTTCAATAGGTGGTGGAATTGGAAGCTACTCTTTATCTTCAATTGAAGATGCAAGAAATGTGTCAAAATTTTTATGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGACCATTAGGTGATGCTATTTTAGATGGAATTGATTTTAATATTGAACTTGGTTCCACACAAAATTGGCAACACCTTGCAAAATTTCTTAAAGAGTATAGTAGATATGGAAAAAAAGTGTATCTTGGTGCTGCACCTCAGTGTCCAATTCCTGATAAATTTTTGGACACTGCCCTTCAAACAGGACTTTTTGACTTTGTTTGGGTCCAATTTTACAACAATCCTCCTTGTCAATATAATGGAAACATAACTAATCTTGTAAATTCATGGAATACATGGACAAGAAGTGTTCCAACCAGGAAGATATTTTTGGGGTTGCCGGCGGCTACGACGGCTGCAGGAAGTGGTTTTATTCCTGCAGATGTGTTGACTTCTGAAATTTTGCCTGTGATTAAGAAATCAAGAAAGTATGGAGGAGTGATGCTTTGGTCAAGATTTCATGATTTGCAGACTGGATATAGCACTTCTATTATTGGAAGCGCAGGGACGGATCCAAAAAATTCGATAAGTGGGGTCAAAATCATTTATCCTAATTTTTTTTGGAACAGTATTCTGGTCGGTATAAATTTCATGTTTAAATTAGTCACCCCTCCCCGCCACCACCACGGTCGCCGTCTGCATGCATCTCTCTCTATCTCTAGTGACCATATCTCAACATCTCTCTATCTCTACCGCTGA 1089 0.3921 MAKNSNTFLSHIFLLFLTFVATSHAGGIAIYWGQNGNEGTLSEACATGKYTHVIIAFLNKFGNDQTPEMNLASHCNPSVPNSCTKFSSEIKDCQSKGIIVLVSIGGGIGSYSLSSIEDARNVSKFLWNTFLGGKSSSRPLGDAILDGIDFNIELGSTQNWQHLAKFLKEYSRYGKKVYLGAAPQCPIPDKFLDTALQTGLFDFVWVQFYNNPPCQYNGNITNLVNSWNTWTRSVPTRKIFLGLPAATTAAGSGFIPADVLTSEILPVIKKSRKYGGVMLWSRFHDLQTGYSTSIIGSAGTDPKNSISGVKIIYPNFFWNSILVGINFMFKLVTPPRHHHGRRLHASLSISSDHISTSLYLYR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05304 362 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Trre1g05304 362 FunFam Acidic endochitinase SE2 26 298 - -
Trre1g05304 362 SUPERFAMILY (Trans)glycosidases 23 294 IPR017853 -
Trre1g05304 362 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Trre1g05304 362 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 301 IPR001223 GO:0005975
Trre1g05304 362 Gene3D Glycosidases 26 298 - -
Trre1g05304 362 CDD GH18_hevamine_XipI_class_III 26 296 IPR045321 -
Trre1g05304 362 PANTHER ENDOCHITINASE 11 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05304 Trre-Chr1 59003481 59005119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05304 5 297 Glycoside Hydrolase AT5G24090 62.126 7.29e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05304 K01183 - gmx:100818728 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05304 1 59003481 59005119 Trre1g05304 1 59003481 59005119 ECH