Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05251 ATGGCGGATCGAGGAGAAGATGAGGATTTACAAATGGCGATTCGGATGAGTATGACGCCTGAACCTAAGCGTAATAAACCGAGGGATGAAGTTGCCGGTGTTGTTTCGGGATTGCCGGAAGATTCGCCGGAATCTAAGACACGGAGACGGGAGCTTATGGCAGCGGCTGCTGAGAAGCGAATGGCAGCGATTGTTAGGGTTTCACCTTCTCCGGCCCCGGCCCCGGCCCCAGCAAGTAAAGGAGTAAAGAAGGAGGCTGAAGTTGTAAGGAGAGTGGAAGAGTTGCCTCTTAGAAGTGAGAGTTTGAGTAAGGAACTTTCTGCGGAAGAAGCTAATAAATTATTTGTAATGGTGTTTGGAAGTGAAGTTTCAAAGGATATTCTAGCACAGTGGTGTAACCAGGGAATAAGGTTTAGCTCTGATCCTGAAACATCAATGGGCCTAGTGCAGCATGAAGGAGGCCCCTGCGGCGTTTTGGCAGCTATACAAGCATTTGTGTTCAAATACATTATTTTCTTCAGTGATGAATTGTCACGCATGCCACAAAATTGGGGTCTGGGTGCATCAAGTAAAAGTCACTCTGTTCCATCATATAATATTTCTTCACTCACTGACGGTGTAAAAGTAAGAGCCCTTGTAAGAAGTATGGGTGAAATTTTGTTTTTATGTGGAAATAATAAAAGGGCTGTGATTGCAACTTTGAGCATTCCAGAGAATGATATTCAACATTTTGAAGGAATCTCCGAGGAAGAGGTTATTGCAAACTCACTTAAAGCACTTTCTATTGAATCTGCCTTGGATCTGCTGAAAGTTCTTCGAGTTGAATCACACACATCAGAAACAACTGCTTTGCAGAGGCTTGAGGCACATATTCCGTTTTTCCAAAGTCGTATGGGGGCATTGCTTTTCCTAATCTCTGCTTTACTATCTCGTGGACTAGATTTGGTTCAGAGTGACAGGGATGATCCCAGCCTACCGTTGGTTACTGCTCCTTTTGGCCATGCCTCCCAGGAAATTGTAAACCTACTACTCTGTGGGCAGGCTGTCCCTAATGTATTTGATGGAAGGATGGATTTAGGTGGAGGGATGTTTCTGAAAGGTATATCGCGAAATGTGGAAGTTGGATTTCTCACCCTGCTAGAATCCCTGAATTTTTGCAAGGTTGGACAGTTTCTAAAAACCCCAAAATGGCCTATATGGGTTGTTGGGAGTGAATCCCATTACACAGTGTTGTTTGCTCTTGATCCCAGTGTTCAAAATGAGAATGAACTTGAAGGAAGGGAAACACAGATTCGCAGAGCTTTTGATGCACAAGATCAAAGTGGAGGTGGTGGCTTCATTAGTGTGGAGGGGTTCCATCAAGTCATCAGAGAAACAAATATTAAACTTCCGGCAGATAAGCTAGATAACCTATGCAGTGCAGGGTTCATTGTATGGAGTGAATTCTGGCAGGTAATTTTGGACCTAGACAAAAACTTTGGAGGTTTGAAAGATTCATCAGGATTGATGGGTAAGAAGGTCTTTGATCTTTTCCATTTTAACGGGATTGCTAAATCAGATTTGAATGGAAGTCAAGTAAATTTTGGAGGTGAAACTCCACTGCAAAGACCCAGGCTCACAAAATTAAGCGTCTCGGTTCCCCCAAGGTGGACGCCTGAGGAATTCATGGCAGATGTGCAAGGTCCATCTGCTTCTGGTGCAAGTGACTCTGCTGGAAAAGACACCGAGGTATCTAAACCAGAGCCTGTCCAGCATGCGCCTTTGGTTGACTGCATAAGGACACGCTGGCCCCGTGCTGTCTGCAGCTGGTCAGGTGATCCTCCTAGTATAGTCTGA 1836 0.4477 MADRGEDEDLQMAIRMSMTPEPKRNKPRDEVAGVVSGLPEDSPESKTRRRELMAAAAEKRMAAIVRVSPSPAPAPAPASKGVKKEAEVVRRVEELPLRSESLSKELSAEEANKLFVMVFGSEVSKDILAQWCNQGIRFSSDPETSMGLVQHEGGPCGVLAAIQAFVFKYIIFFSDELSRMPQNWGLGASSKSHSVPSYNISSLTDGVKVRALVRSMGEILFLCGNNKRAVIATLSIPENDIQHFEGISEEEVIANSLKALSIESALDLLKVLRVESHTSETTALQRLEAHIPFFQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGGGMFLKGISRNVEVGFLTLLESLNFCKVGQFLKTPKWPIWVVGSESHYTVLFALDPSVQNENELEGRETQIRRAFDAQDQSGGGGFISVEGFHQVIRETNIKLPADKLDNLCSAGFIVWSEFWQVILDLDKNFGGLKDSSGLMGKKVFDLFHFNGIAKSDLNGSQVNFGGETPLQRPRLTKLSVSVPPRWTPEEFMADVQGPSASGASDSAGKDTEVSKPEPVQHAPLVDCIRTRWPRAVCSWSGDPPSIV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05251 611 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 5 24 IPR003903 -
Trre1g05251 611 SUPERFAMILY EF-hand 427 488 IPR011992 -
Trre1g05251 611 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g05251 611 MobiDBLite consensus disorder prediction 558 584 - -
Trre1g05251 611 Pfam Deubiquitinating enzyme MINDY-3/4, conserved domain 117 425 IPR025257 -
Trre1g05251 611 PANTHER UNCHARACTERIZED 6 610 IPR039785 GO:0004843|GO:0071108|GO:1990380
Trre1g05251 611 SMART DUF4205_3 115 481 IPR025257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05251 Trre-Chr1 58538420 58550573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05251 K22647 - gmx:100813222 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05251 1 58538420 58550573 Trre1g05251 1 58538420 58550573 ECH