Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05103 ATGGGCGACAAAAGAAAAAAGCACCGTCGTCAACACGATTCAACCTCTCCTTCTCCTTCATCCTCTCCTTCCACCGACTCCGATTCTGACTCCGACCGCTCTTCTCGCCGCCGCCGTCATCGCCGTGAAAAAGACCGCCGCAGAAAAAGTGAAGGAAGCTCCAAGCGAGAAAAGGATAGCAGAAGAAAGGAAAAGAGAAAAAGGAGAGACAGAGATAGGAAAAAAACCAAGCGCCACCACTATTCCGATGAATCCAATTCTTCCGACGATGAAATTCAACCACAAACCGCGCTCCGTGAAATGTTGACAGAGTTTCCCAATGTCGGCAACGATTTGATGCAGCTATTGCAAATGATTGACAATGGACAAGCTGTGGATATAAAGGATATATCAGAGAAGTCTCTAGTGAAGCATTTGAAGAAGCTATTCATTTCCTTAAATCTTAAGGAAAATGGGGATAGAGTTTTTTTGTTGCCTTCTAAAGCTTCTCCTACTTTAGATGTTATTGGCCCTCTAATTCAATCTTATATGCATCCTGCGAATGATCGAACGGAACCTTCAGCAGCATTGCCTGAAACATCGGCTCCGGCAGAACAGACGGTAGATGACAATTCAATAGAACCTCCTGAGGATCATTCTGTTGGTCCTAGGAAAAGGGTGATTGGTCCAGCTATGCCGTCTGCTGAATTACTTGCTGCTGCTGCTAAATTAACAGAAGCACAGACCGAGTTCAGAGAAGCTGAATTGGACGATGATACCGAACTATTTGTGGGACCTCCACCTCCTGCTATGGTTTCTGAAGCAGAATCAGCTAACGAAGCAGAACGTTTTGAAGAGGTCGCCAGGATAATGGAAGCTGGGATCGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCGATGTTAACATAAAGAAAAGGTACTGGAAGATGTCACTCTTAGTTCATCCAGATAAATGCTCTCATCCACAAGCCCATCAAGCATTTATTAAATTAAATAAAGCTTTTAAAGAGTTACAAGATCCAGAAAAGCGGAAAGCAATGGATGATAAAATCAAACTCAAACAAGAACAGGAGGACTTTAAGGCTGAACTTAAAGTCATGCGAGAGGCTGCACTGTGGAGAAGATCCCAAGGTATATCCATGGAGGGTGACGAGGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCCACAAGAGATGAATGGATGACAACATTGCCTCCGGAGAGGAAACCTGGTGGCGTGTCTATGCAATCAACCCAATTTAGCCGGGGAACAAAGGAAGGTAGAGGAGACACTAGTATTTGGACAGACACCCCTACTGACAGAGCTCAGAAAGCAAAGATGAATTATTTGGAAGCATACAACCAGGCCACTGCACTTGCCTCAAACGAAGAAGATAAGAAAAGGGCTAGTACAGATGCAGATTTGGTGGACAAATACAACAAAGCAAAACGATCAAAAACATTGGTGCAAAAACATCAAGAAGAGGTTGCTAGCAAATCCAAGAAAAAGTCCAAGCAACAGACGACGGATAAGGGAGAATGGATAGGTCAACATCCATGGAAACCATGGGATCGTGAAAAGGATCTGACTGCTGGGAGGATGAAAGTAAAACTTGATGCAGAAGGCATGTCTGAGGGATTATCTTCAAGGTTTAATTCTGGAAACTTTCAAAGGAACTTCCTTTGA 1701 0.438 MGDKRKKHRRQHDSTSPSPSSSPSTDSDSDSDRSSRRRRHRREKDRRRKSEGSSKREKDSRRKEKRKRRDRDRKKTKRHHYSDESNSSDDEIQPQTALREMLTEFPNVGNDLMQLLQMIDNGQAVDIKDISEKSLVKHLKKLFISLNLKENGDRVFLLPSKASPTLDVIGPLIQSYMHPANDRTEPSAALPETSAPAEQTVDDNSIEPPEDHSVGPRKRVIGPAMPSAELLAAAAKLTEAQTEFREAELDDDTELFVGPPPPAMVSEAESANEAERFEEVARIMEAGIDSPYDVLGVNHNMSDVNIKKRYWKMSLLVHPDKCSHPQAHQAFIKLNKAFKELQDPEKRKAMDDKIKLKQEQEDFKAELKVMREAALWRRSQGISMEGDEELLAQTEVKVEPTRDEWMTTLPPERKPGGVSMQSTQFSRGTKEGRGDTSIWTDTPTDRAQKAKMNYLEAYNQATALASNEEDKKRASTDADLVDKYNKAKRSKTLVQKHQEEVASKSKKKSKQQTTDKGEWIGQHPWKPWDREKDLTAGRMKVKLDAEGMSEGLSSRFNSGNFQRNFL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05103 566 MobiDBLite consensus disorder prediction 178 219 - -
Trre1g05103 566 Coils Coil 346 373 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 488 566 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 488 514 - -
Trre1g05103 566 Pfam DnaJ domain 291 351 IPR001623 -
Trre1g05103 566 Coils Coil 230 250 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 417 442 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 1 93 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 522 545 - -
Trre1g05103 566 PRINTS DnaJ domain signature 292 310 IPR001623 -
Trre1g05103 566 PRINTS DnaJ domain signature 326 346 IPR001623 -
Trre1g05103 566 PRINTS DnaJ domain signature 310 325 IPR001623 -
Trre1g05103 566 SUPERFAMILY Chaperone J-domain 264 348 IPR036869 -
Trre1g05103 566 ProSiteProfiles dnaJ domain profile. 290 355 IPR001623 -
Trre1g05103 566 SMART dnaj_3 289 346 IPR001623 -
Trre1g05103 566 MobiDBLite consensus disorder prediction 60 76 - -
Trre1g05103 566 Pfam Protein of unknown function (DUF3752) 410 556 IPR022226 -
Trre1g05103 566 CDD DnaJ 291 343 IPR001623 -
Trre1g05103 566 Gene3D DnaJ domain 276 374 IPR036869 -
Trre1g05103 566 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 6 566 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 406 442 - -
Trre1g05103 566 MobiDBLite consensus disorder prediction 551 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05103 Trre-Chr1 57219200 57227006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05103 256 355 Miscellaneous Gene Families AT5G49580 33.333 2.57e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05103 - - gmx:100788598 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05103 1 57219200 57227006 Trre1g05103 1 57219200 57227006 ECH