Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04824 ATGGCACTCTCGCGTCTTCGTCAACCCATCATCTCTCATTCTCTTCGTATCCTCACTTCTTCCACCAGATCCATTTCGAGAATTCCTAATTCAAGGATTTATTCTGTCGTTGGTAATGGGAATCTAAGGCCTGCATCTTGGTCTGGGCTTACTGGAGTTGGTGATAGACCATTGAAGTCAAAGTGGATTGATGTCAAATTCTTCTCATCTTCAGATTTTCCACATGAAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACCCAAGGTAATATTGCAAAGTGGAGGAAAAAAGAAGGGGATAAGATAGCAGTAGGTGATATACTATGTGAAATTGAAACTGACAAAGCTACACTTGAATTTGAAAGTCTTGAAGAAGGGTTTCTGGCAAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCAGTTGGACAACCAATTGCAGTAACAGTTGAGGAGGAAAGCGACATTCAAAATGTTTCTGCTTCTGTGGGGGGTGAGAGCGGAGTTGAAGAGAAGAAACCAACACATCAGGATGTCGCAGATGAGGATAGTAAACCAGAATCAACTTCTACGATTGATACATCAGATCTTCCACCTCACATCATTCTTGGCATGCCTGCTTTGTCCCCAACAATGAACCAAGGAAACATTGCTAAATGGAATAAAAAGGAAGGAGATAAGATTGAAGTGGGTGACATATTATGCGAGATAGAGACAGACAAAGCTACCCTTGAATTTGAAAGTCTCGAAGAGGGGTACCTTGCTAAGATAGTTGCACCAGAAGGTTCAAAAGAAGTGGCAGTTGGACAGCCTATTGCAATAACAGTTGAAGATGCAGGTGATATTGAAGTTGTAAAGAATTCTATTAGCAGCAGCTCAGTTGACCAAAAGGAGAAGGCCACCCAACATGGCACAAAAAGTGAGGTCAAAACTCAAAAAAACAATACCGCACGAATCAGTCCAGCTGCAAAGTTGCTAATTATGGAATATGGATTGGATGCATCAACATTGAATGCAACTGGTCCTCATGGCACCCTACTGAAAGGCGATGTTCTTTCTGCAATTAAATCAGGAAAATTGTCTCCAAAACCTGATTCATCTAAAGCAAAGGCATCGTCATCATCTCAAAGTCATCAAGTTGCGGCTTCACAAGAGTCAAAGTCTAACTTAAAGCAGTCAGATGCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCAAAACAAAATACACCACACTTATATTTATCATCAGATGTTACACTGGATCCACTCCTTTCCCTTCGAAAGGATCTTAAAGAGCAGTATGACGTTAAAGTTTCGGTGAATGACATTATTATCAAAGTTGTAGCGGCTGCTCTCAGAAATGTACCAGAAGCGAACGCATACTGGAATGAAGAGAAAGGCGAGGTCATCTTGTGCGATTCTGTTGACATATCAATAGCAGTTGCCACTGAGAAGGGCTTGATGACTCCAATATTAAAAAATGCCGATCACAAGACAATATCTGCCATCTCCTCAGAGGTCAAGGAACTTGCTGCAAAAGCACGTGAAGGCAAGTTGAAGCCGCAAGAATTCCAAGGGGGCACTTTTAGTATTTCAAACTTAGGAATGTATCCCGTGGATAAATTCTGTGCTATTATAAACCCCCCACAGGCTTGCATTCTTGCTGTAGGGAGAGGCATCAAAGTTGTGGAACCAGTAATCGGAGCTGATGGAATTGAGAAGCCGTCAGTTGCTACTAAGTTGAACTTAACATTGTCTGCCGATCATCGCGTCTTTGATGGCAAAGTTGGAGGTGCATTTCTCTCTGCTCTGCAATCAAACTTCAGTGATATAAGACGACTTCTTTTATAA 1884 0.4161 MALSRLRQPIISHSLRILTSSTRSISRIPNSRIYSVVGNGNLRPASWSGLTGVGDRPLKSKWIDVKFFSSSDFPHEVLGMPALSPTMTQGNIAKWRKKEGDKIAVGDILCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAVTVEEESDIQNVSASVGGESGVEEKKPTHQDVADEDSKPESTSTIDTSDLPPHIILGMPALSPTMNQGNIAKWNKKEGDKIEVGDILCEIETDKATLEFESLEEGYLAKIVAPEGSKEVAVGQPIAITVEDAGDIEVVKNSISSSSVDQKEKATQHGTKSEVKTQKNNTARISPAAKLLIMEYGLDASTLNATGPHGTLLKGDVLSAIKSGKLSPKPDSSKAKASSSSQSHQVAASQESKSNLKQSDAYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVTLDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNEEKGEVILCDSVDISIAVATEKGLMTPILKNADHKTISAISSEVKELAAKAREGKLKPQEFQGGTFSISNLGMYPVDKFCAIINPPQACILAVGRGIKVVEPVIGADGIEKPSVATKLNLTLSADHRVFDGKVGGAFLSALQSNFSDIRRLLL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04824 627 MobiDBLite consensus disorder prediction 154 200 - -
Trre1g04824 627 SUPERFAMILY CoA-dependent acyltransferases 393 627 - -
Trre1g04824 627 SUPERFAMILY Single hybrid motif 78 164 IPR011053 -
Trre1g04824 627 Gene3D - 319 360 IPR036625 GO:0016746
Trre1g04824 627 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 204 618 IPR006257 GO:0004742|GO:0006090|GO:0045254
Trre1g04824 627 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 204 627 IPR045257 GO:0006086|GO:0045254
Trre1g04824 627 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 71 175 - -
Trre1g04824 627 SUPERFAMILY Single hybrid motif 201 290 IPR011053 -
Trre1g04824 627 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 319 356 IPR004167 GO:0016746
Trre1g04824 627 MobiDBLite consensus disorder prediction 170 190 - -
Trre1g04824 627 MobiDBLite consensus disorder prediction 359 396 - -
Trre1g04824 627 ProSiteProfiles Biotinyl/lipoyl domain profile. 201 277 IPR000089 -
Trre1g04824 627 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 226 255 IPR003016 -
Trre1g04824 627 Gene3D - 381 627 IPR023213 -
Trre1g04824 627 Gene3D - 70 174 - -
Trre1g04824 627 Pfam Biotin-requiring enzyme 78 149 IPR000089 -
Trre1g04824 627 Pfam Biotin-requiring enzyme 205 275 IPR000089 -
Trre1g04824 627 Pfam e3 binding domain 319 353 IPR004167 GO:0016746
Trre1g04824 627 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 382 625 - -
Trre1g04824 627 Gene3D - 197 283 - -
Trre1g04824 627 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 397 626 IPR001078 GO:0016746
Trre1g04824 627 CDD lipoyl_domain 206 275 - -
Trre1g04824 627 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 197 301 - -
Trre1g04824 627 MobiDBLite consensus disorder prediction 288 316 - -
Trre1g04824 627 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 100 129 IPR003016 -
Trre1g04824 627 ProSiteProfiles Biotinyl/lipoyl domain profile. 75 151 IPR000089 -
Trre1g04824 627 CDD lipoyl_domain 80 149 - -
Trre1g04824 627 MobiDBLite consensus disorder prediction 367 396 - -
Trre1g04824 627 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 312 358 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04824 Trre-Chr1 54460955 54472373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04824 195 627 Acyl Lipid Metabolism Gene Families AT3G13930 43.107 5.34e-111 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04824 K00627 - gmx:100780758 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04824 1 54460955 54472373 Trre1g04824 1 54460955 54472373 ECH