Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g03088 | ATGGGTAAGATTCTGAGAGAAACATCGAGGCCTTCCTCAAATTCATCACCGGCATCACCTTCTACAGGTCCGGCAACAACTTCGTCGACATCGATAACCGAAACGGTTAAAGGTTCTCACAGGTTCAAGATTTCGGGATATTCATTATCGAAAGGGATTGGAATTGGGAAGTACATAGCATCGGAGATATTTTCCGTTGGTGGTTACAATTGGGCGATTTATTTCTATCCTGATGGGAAAAGTTTGGAGGATAATGCTACGTATGTGTCGCTTTTCATCGCGCTTGCAAGCGAAGGAACTGATGTTAGGGCTCTTTTTGAATTGACCCTTTTGGATCAGAGTGGGAAAGAGAGGCATAAGGTTCATAGCCATTTTGAAAGGACGTTGGAGAGTGGTCCGTACACGTTGAAATATCGTGGTAGCATGTGGGGATACAAAAGATTTTTTAAGAGAATATCACTAGAGACATCAGATTACCTTAAAGATGACTGCCTTAGTGTTAATTGTAGCGTTGGTGTCGTGAGGTCACACACAGAGGGCCCTAAAACATTTTCAATTGCAATACCACCTTCTACTATTGGTCACCAGTTCGGAAAGCTACTGGAAAGTGGAAAGGACAGTGATGTGAGTTTTGAAGTGAATGGTGAAGTTTTTGCAGCTCATAAATTGGTACTAGCAGCTCGATCAGCTGTTTTTAGAGCTCAGCTTTTTGGTCCTATGAAAGATAAGAATACACGGTGTATAAAAGTTGAAGACATGGAGGCTCCAGTTTTCAAGGCATTGCTTCATGTTATATATTGGGATTCACTGCCTGACATGCAAGAGCTTACTGGGATCAACTCAAAATGGGCAACTACCTTAATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGGCTTAGAAAGACTTAGGCTGATGTGTGAAGCAAGTCTATGTGAAGATGTTGCAATAAACACTGTAGCTACAACTTTAGCTTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAAGCAGTCTGTCTGAAATTCATTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTCGAGTACCTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTACGTTGCTAGATTTACTGAGCATTCGGACTTCCTGTGCAAGCATAGGAACGAAGCAATACTTGATGGCAGCGATGTAAATGGAAGGCGGGTGAAGCAAAGACTATACTGTGAAAAATGA | 1245 | 0.4281 | MGKILRETSRPSSNSSPASPSTGPATTSSTSITETVKGSHRFKISGYSLSKGIGIGKYIASEIFSVGGYNWAIYFYPDGKSLEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRISLETSDYLKDDCLSVNCSVGVVRSHTEGPKTFSIAIPPSTIGHQFGKLLESGKDSDVSFEVNGEVFAAHKLVLAARSAVFRAQLFGPMKDKNTRCIKVEDMEAPVFKALLHVIYWDSLPDMQELTGINSKWATTLMAQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNEAILDGSDVNGRRVKQRLYCEK | 414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g03088 | 414 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
| Trre1g03088 | 414 | SUPERFAMILY | TRAF domain-like | 34 | 173 | - | - | |
| Trre1g03088 | 414 | ProSiteProfiles | BTB domain profile. | 207 | 266 | IPR000210 | GO:0005515 | |
| Trre1g03088 | 414 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Trre1g03088 | 414 | ProSiteProfiles | MATH/TRAF domain profile. | 37 | 171 | IPR002083 | GO:0005515 | |
| Trre1g03088 | 414 | CDD | MATH | 38 | 171 | IPR002083 | GO:0005515 | |
| Trre1g03088 | 414 | FunFam | BTB-POZ and math domain 1 | 316 | 393 | - | - | |
| Trre1g03088 | 414 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 35 | 175 | IPR008974 | GO:0005515 | |
| Trre1g03088 | 414 | Gene3D | Potassium Channel Kv1.1; Chain A | 183 | 310 | IPR011333 | - | |
| Trre1g03088 | 414 | FunFam | BTB-POZ and math domain 1 | 183 | 310 | - | - | |
| Trre1g03088 | 414 | CDD | BTB_POZ_BPM_plant | 193 | 313 | - | - | |
| Trre1g03088 | 414 | SMART | BTB_4 | 207 | 316 | IPR000210 | GO:0005515 | |
| Trre1g03088 | 414 | CDD | BACK_AtBPM-like | 313 | 376 | IPR034090 | - | |
| Trre1g03088 | 414 | Pfam | BTB/POZ domain | 198 | 314 | IPR000210 | GO:0005515 | |
| Trre1g03088 | 414 | PANTHER | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 27 | 374 | IPR045005 | GO:0016567 | |
| Trre1g03088 | 414 | SMART | math_3 | 42 | 154 | IPR002083 | GO:0005515 | |
| Trre1g03088 | 414 | Gene3D | - | 316 | 392 | - | - | |
| Trre1g03088 | 414 | SUPERFAMILY | POZ domain | 184 | 314 | IPR011333 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g03088 | Trre-Chr1 | 26639501 | 26642789 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g03088 | K10523 | - | gmx:100811065 | 741.88 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre1g03088 | 1 | 26639501 | 26642789 | Trre1g03088 | 1 | 26639501 | 26642789 | ECH | |
| Trre13g03749 | 13 | 45587385 | 45590213 | Trre1g03088 | 1 | 26639501 | 26642789 | PCT |