Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03080 ATGCTTGAAGAAGAAAGAGTGAATAAGAAAAGTTTTCATTTTTATGTGCGCTTCTCTGTTCCGCCGCGAACCAGCGAGTCGTGTCGTGCCGTCGTCGTCCCCTTTAGTTTCCGCCGTGAATCGCGCATTCACTCTCCTTCAAGGAACACTCTAATTCTAGACATGTTCTCCAAGAGAAAAATTCAAACTACCTTCTGCAACTACCTCAACAACAATCTCAATCTTCACATTTACACAAGATCTATATCCAGTCTCAAAGTAGTATGGCGCAAGGACCCATTACTAGACCAAGCCATAGAAAACGATAAACGCTTCAAGCAATGTGCCCGCATTGTCAAAGAAGTTCTCAATGAACCAGGTCAAGTCATCCCTCTACGCTACCTCGAAAAACGGCGCGAAAGGATGCGGCTCAAGGTTAAAATTGAAACCTTTATGAATCAAAACCCTTTTTTATTCGATATCTATTATGATCGCATTAAACCCAAAACTGAACCCGTTAAATTTGTCCGGGTCAGCGATCAGCTTCTTCAGTTTCTGGAGGAAGAGAAACAAATTTATAAGGAGAATGAACCGTTAATTGTTTCTAAGTTGTGTAAATTGTTGATGATGTCAAAGAATAAGGTTGTCAGTGCTGATAAATTGCTTCATGTGAAGAGGGAATTTGGTTTCCCTAATGATTTTTTGGTTGATTTGGTTCCTAGGTATCCGGAATATTTTAGGTTAACTGGTTTACCTGGGGAGGGAAAATCGTTTCTTGAATTGGTTAATTGGAACCCTGAGTTTGCAAAATCTGTTATTGAGAAAAGGGCTGAAGAGGAAAGTAGGCTTACTGGGATTAGGGTTAGGCCTAGTTTCAATGTAAAGCTTCCTCCAGGGTTTGTGTTGAAGAAGGAGATGAGGGAGTGGATTAGGGATTGGATGGAGCTTGATTATGTATCGCCTTACGAGGATGTTTCACATTTGGAGCAAGCTTCCAGAGAGATGGAGAAAAGATCTGTTGGGGTGTTCCACGAATTGCTTTCTCTTTCGCTGTATAAGAGGGTTCCGGTGCCGATTCTTGGAAAGTTTTGTGATGAATATAGGTTTTCGAATGCTTTTTCAAGCGCTTTTACAAGGCACTCGGGTATATTTTATATGTCATTGAAAGGTGGGATTGAAACTGCAATGCTGAGAGAAGCATATGAAGGGGATAAGTTGATTGACATTGATCCACTGCTTCAGATAAAAGAGAGATTTGCTGAGTTGCTGAAGGAGGGTTGGCGGAAAAGAGCGGAGCAGTTGAGGTTGAAACAAGAGAAAATTAAACAAGATATGGAACTTGTGGCCACAAGAGTTGGTGAATAA 1344 0.4115 MLEEERVNKKSFHFYVRFSVPPRTSESCRAVVVPFSFRRESRIHSPSRNTLILDMFSKRKIQTTFCNYLNNNLNLHIYTRSISSLKVVWRKDPLLDQAIENDKRFKQCARIVKEVLNEPGQVIPLRYLEKRRERMRLKVKIETFMNQNPFLFDIYYDRIKPKTEPVKFVRVSDQLLQFLEEEKQIYKENEPLIVSKLCKLLMMSKNKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVIEKRAEEESRLTGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYEGDKLIDIDPLLQIKERFAELLKEGWRKRAEQLRLKQEKIKQDMELVATRVGE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03080 447 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 82 433 IPR045040 GO:0003723
Trre1g03080 447 Coils Coil 417 437 - -
Trre1g03080 447 Pfam Plant organelle RNA recognition domain 91 420 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03080 Trre-Chr1 26418992 26422092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03080 - - lang:109336290 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03080 1 26418992 26422092 Trre1g03080 1 26418992 26422092 ECH
Trre13g04645 13 53684056 53684453 Trre1g03080 1 26418992 26422092 PCT