Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03039 ATGGCGTATTTTCCCAAGGAACTTAGAATCGTCCTCGTTGGCGATAAATCCACCGGAAAATCCACTCTCATTTCCGCCATGGCTTCCGATTCTTTCCCGGCCACTGTTCCGCCATTACTTCCACCCACTCGTTTGCCTACTAATTCCTTCACTGATTCTGTTCCTCTCCTCCTCATTGACACACCTTCAAGTGTGGGACAACAAGATAAACTTATTGAAGAATTGAAGCGTGCTGATTCAGTTGTTGTAACCTATGCTTGTGATGATATTGTGAGTTTTGAGCGTGTCAGCACTCACTGGTTGCCTCAACTGCAGAAGCTTGAGGTGAAGGTACCGGTGCTTGTGGTTGGTTGTAAGCTTGATCTTCGTGATGAAAGTAGGCAAGTTAGCTTAGAGAGTCTGACAACAAATATCATGAACCAGTTTAAAGAAGTTGTTACATGTATTGAATGCTCTGCAGCTACACTTTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCGGTACTTCATCCGGTGGATCCTTTGTTTGATTATGATACAAACTCTTTAACAGATCGGTGTGTAAGGGCATTAAGAAGAATTTTTAATCTTTTTGATTACAACATGGATGGCACCCTCACTGATCAAGAAGTAAACGAGTTTCAGATTAGCAGCTTTGGTGCATCATTGCAGCGGTCTGACGTAACTCAAATAAAAACATTGGTAGAGCAGAATGTTCCTGAAGGAGTGAATTCTCTTGGTTTTACTTTTCCTGGCTTCATTGAAATCCATAATATGTTTCTAAAGAAAGGACGAACAGAGACATTCTGGACAGTTCTAAGAAAGTTTGGATATGGTAACGATTTAAAACTGCGCGATGATTTTCTTCCAGTTCCATCTAAGCAAGCTTCTGATCAGAGCGTGGAGCTGAGTGATGCAGCCATAGAGTATTTGAAGGGTGTCTTTAGATTGTTAGATACGGATAAGGATCAATTACTACGACCTGCAGAAGTTGATAAGCTATTTGATGCAGCTCCAGAAAGTCCGTGGAAGGATGCTCCATATAAGGATGCAGCTGAGACAACTGACATGGGTTATATATCTCTAAACGGATTTCTTTCTCAGTGGGCCCTTATGACATCACTGGATCCAAGATATAGTTTGGCCAATTTGATTTACATCGGTTATAGAGATAAGCCTTCTGCAGCACTCCGTGTCACTAGTAGAAGATCAGAAGACCGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTACATTTTTGGCTCTAAAAATGCCGGGAAATCTGCTTTGTTGTATTCATTATTGGGAAGGTCTTTCTCAAATAACTATACTCCGACAACTGTTGAGCGGTATGCAGCAAATATCATTGAATTAATAGAGGGAACAAAGAAAACTCTCATATTGTGCGAGATTCCAGAGGATAAAGTATCGGTTTTTTTGTCAAATAAGGATTTTCTGGCTGCATGTGATATAGCTGCTTTTGTACATGACAGTTCAGATGGATATTCATGGAAAAAATCCATAGATTTGCTTGAGAAGGTTGTTAACCAAGGAGAGCTAACTGGTCACAAATTTCCTTGCCTCCTAATTGCTGCTAAGGATGATTTAACTCCATTTCCAAGGGCAGTACAAGATTCAGTTAAGGTTGCTCGGGAATTGAAAATTGACGCTCCTATTCGTGTGAGTATGAAATCAGGAGATTCAAGCGTGTATATTAAGATTATCAATGCTGCAGAACACCCTCATTTGAGTATTCCGGAAACTGAGTTTGTGAGGAAAAGAAAGCAACACCAGCAGCTTCTTCACACTTTTATATTTGCCCTAGCTGGGGCTGCTATGGCACTTGTGGGTTTGACAGCTCGTCGCGCACGTGCAAATAAGAATTCTTCTTCTTAG 1908 0.4078 MAYFPKELRIVLVGDKSTGKSTLISAMASDSFPATVPPLLPPTRLPTNSFTDSVPLLLIDTPSSVGQQDKLIEELKRADSVVVTYACDDIVSFERVSTHWLPQLQKLEVKVPVLVVGCKLDLRDESRQVSLESLTTNIMNQFKEVVTCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDYDTNSLTDRCVRALRRIFNLFDYNMDGTLTDQEVNEFQISSFGASLQRSDVTQIKTLVEQNVPEGVNSLGFTFPGFIEIHNMFLKKGRTETFWTVLRKFGYGNDLKLRDDFLPVPSKQASDQSVELSDAAIEYLKGVFRLLDTDKDQLLRPAEVDKLFDAAPESPWKDAPYKDAAETTDMGYISLNGFLSQWALMTSLDPRYSLANLIYIGYRDKPSAALRVTSRRSEDRKKQKTERNVFQCYIFGSKNAGKSALLYSLLGRSFSNNYTPTTVERYAANIIELIEGTKKTLILCEIPEDKVSVFLSNKDFLAACDIAAFVHDSSDGYSWKKSIDLLEKVVNQGELTGHKFPCLLIAAKDDLTPFPRAVQDSVKVARELKIDAPIRVSMKSGDSSVYIKIINAAEHPHLSIPETEFVRKRKQHQQLLHTFIFALAGAAMALVGLTARRARANKNSSS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03039 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 203 IPR027417 -
Trre1g03039 635 PRINTS Transforming protein P21 ras signature 109 122 - -
Trre1g03039 635 PRINTS Transforming protein P21 ras signature 8 29 - -
Trre1g03039 635 PRINTS Transforming protein P21 ras signature 148 170 - -
Trre1g03039 635 SUPERFAMILY EF-hand 182 374 IPR011992 -
Trre1g03039 635 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Trre1g03039 635 ProSiteProfiles Miro domain profile. 416 584 IPR020860 GO:0003924|GO:0005525
Trre1g03039 635 FunFam Mitochondrial Rho GTPase 483 583 - -
Trre1g03039 635 Gene3D - 5 175 IPR027417 -
Trre1g03039 635 Pfam EF hand associated 224 308 IPR013567 -
Trre1g03039 635 PANTHER RHO FAMILY GTPASE 8 172 IPR003578 GO:0005525|GO:0007264
Trre1g03039 635 Gene3D - 286 476 - -
Trre1g03039 635 SMART ras_sub_4 5 173 - -
Trre1g03039 635 PIRSF Miro 4 635 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Trre1g03039 635 ProSiteProfiles EF-hand calcium-binding domain profile. 308 343 IPR002048 GO:0005509
Trre1g03039 635 Gene3D - 180 284 - -
Trre1g03039 635 SMART rab_sub_5 8 173 - -
Trre1g03039 635 FunFam Mitochondrial Rho GTPase 286 476 - -
Trre1g03039 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 588 IPR027417 -
Trre1g03039 635 Gene3D - 484 582 IPR027417 -
Trre1g03039 635 CDD Miro2 415 594 - -
Trre1g03039 635 FunFam Mitochondrial Rho GTPase 180 284 - -
Trre1g03039 635 SMART rho_sub_3 10 173 IPR001806 GO:0003924|GO:0005525
Trre1g03039 635 ProSiteProfiles Miro domain profile. 5 172 IPR020860 GO:0003924|GO:0005525
Trre1g03039 635 Pfam EF hand associated 345 412 IPR013566 -
Trre1g03039 635 Pfam Ras family 9 170 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03039 Trre-Chr1 26173604 26180000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03039 8 633 EF-hand Containing Proteins AT3G63150 53.736 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03039 K07870 - gmx:100806983 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03782 13 45970949 45978950 Trre1g03039 1 26173604 26180000 PCT