Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02936 ATGGCAACCATCTCAGCTACCACTGCAACTGCATCGATCACCCGTGCATGTCTTGTACAAAAGAGACCTCTTGCAGTCTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTTGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCATCTGTGCAAGAAAGCAACTCAAAGGTAGGAATGGGAGCATCTATGTTAGCAGCTGCATGTGCTGCAGCCATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGTACCGAAGGAACAGGACTTCCCTTCGGACTCAGCAACAACCTTCTTGGTTGGATTCTTTTTGCCGTGTTTGGTCTTATTTGGGCTCTCTATTTTATTTACGCTTCGGGTCTTGAGGAGGATGAAGAATCTGGATTGTCCCTTTAA 414 0.4734 MATISATTATASITRACLVQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVQESNSKVGMGASMLAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFAVFGLIWALYFIYASGLEEDEESGLSL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02936 137 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
Trre1g02936 137 Pfam Photosystem II reaction centre W protein (PsbW) 1 137 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02936 Trre-Chr1 24991137 24992041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02936 K02721 - gmx:100305788 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02936 1 24991137 24992041 Trre1g02936 1 24991137 24992041 ECH
Trre13g03930 13 47432202 47432690 Trre1g02936 1 24991137 24992041 PCT