Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02469 ATGCCTTCCAGTCACCTGCTTCTGGAGGAACCAATTAGGATGGCTTCCATCCTAGAACCATCAAAAGCCAGCTTTTTTTCTGCAATGACAAAGATTGTTGGAACATTGGGTCCTAAATCTCGATCTGTTGAAACTATTTCTGGCTGTCTTAAAGCTGGCATGTCTGTGGCTCGTTTTGATTTTTCGTGGTGTGATCCTGAGTATCACCAGGAAACTTTGGAGAATTTGAAGACTGCTATCAAGGGTACTAAGAAGCTATGTGCTATTATGCTGGACACAGTGGGTGCAGAGATGCAGGTTGTTAACAAAAGTGAGACAACTATCTCACTTGAGATAGATGCTCAGGTTGTTCTGACTCCCAACCAGGGACAAGAAGCTTCTTCGGCGCTATTGCCAATCAACTTTGATGGACTGGCTCAGGCAGTGAAGAAGGGAGACACAATTTTTATCGGTCAATACTTGTTCACAGGAAGTGAAACTACTTCTGTATGGCTAGAGGTATCTGAAGTCCAAGGGAATGATGTCGTATGTATTATAAAGAATTCGGCTACATTGACCGGCTCATTGTTCACTTTGCATGCCTCTCAAATTCATATTGATTTGCCTACCCTTACAGAGAAAGACAAGGAGGTTATAAGCACCTGGGGAGTTAAAAACAAAATTGATTTTCTGTCATTGTCATATACTCGGCATGCTAAAGATGTCCGCGAGGCTCGTGATTTCCTTTCAAAGTTGGGTGATCTTAGCCAGACTCAAATTTTTGCAAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTGCAAGAAGCTGACGGTATTATCCTTTCCCGTGGAAATTTGGGCATTGATCTTCCACCAGAGAAGGTTTTTCTATTTCAAAAATCTGCCCTACACAAGTGTAATATGGCTGGGAAGCCTGCTGTGCTTACGCGTGTTGTGGACAGCATGACTGACAACTTAAGACCAACTCGTGCTGAAGCCACTGATGTTGCCAATGCTGTTTTAGATGGAAGTGATGCAATTCTTCTGGGTGCTGAGACTTTACGTGGTTTGTACCCTGTTGAGACTATTTCTACTGTTGGTAGAATTTGTTCAGAGGCTGAGAAAGTTTTCAATCAAGATGTTTATTTTAAAAGGACGGTCAAATTTGTCGGAGAACCAATGACCCACTTGGAATCTATTGCATCCTCTGCGGTTCGGGCTGCTATTAAGGTGAAGGCTTCTATTATAATTTGCTTCACTTCATCTGGAAGGGCTGCAAGATTGATTGCAAAGTATAGACCAACAATGCCAGTTCTCTCTGTGGTGATCCCCCGACTTAAGACCAATCAGCTAAAGTGGAGCTTTAGTGGAGCTTTTGAGGCAAGGCAATCACTTATCGTAAGAGGTCTCTTTCCTATGCTTGCTGATCCTCGACATCCTGCTGAGTCAACAAGTGCATCAAATGAATCTATTCTTAAGGTTGCCCTTGATCATGGAAAAGCATTGGGAGTTATAAAGTCACATGACCGAGTTGTTGTCTGTCAGAAACTTGGCGATGCATCTGTGGTTAAGATTATCGAGCTTGAAGATTAA 1584 0.4249 MPSSHLLLEEPIRMASILEPSKASFFSAMTKIVGTLGPKSRSVETISGCLKAGMSVARFDFSWCDPEYHQETLENLKTAIKGTKKLCAIMLDTVGAEMQVVNKSETTISLEIDAQVVLTPNQGQEASSALLPINFDGLAQAVKKGDTIFIGQYLFTGSETTSVWLEVSEVQGNDVVCIIKNSATLTGSLFTLHASQIHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAKDVREARDFLSKLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKSALHKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGRICSEAEKVFNQDVYFKRTVKFVGEPMTHLESIASSAVRAAIKVKASIIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTSASNESILKVALDHGKALGVIKSHDRVVVCQKLGDASVVKIIELED 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02469 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 8 376 IPR015813 GO:0003824
Trre1g02469 527 Gene3D - 96 202 IPR015806 GO:0004743|GO:0006096
Trre1g02469 527 FunFam Pyruvate kinase 96 202 - -
Trre1g02469 527 Pfam Pyruvate kinase, alpha/beta domain 395 522 IPR015795 -
Trre1g02469 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 Pfam Pyruvate kinase, barrel domain 30 376 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 FunFam Pyruvate kinase 371 513 - -
Trre1g02469 527 Gene3D - 30 370 IPR040442 -
Trre1g02469 527 SUPERFAMILY PK C-terminal domain-like 358 515 IPR036918 -
Trre1g02469 527 Gene3D - 371 513 IPR036918 -
Trre1g02469 527 SUPERFAMILY PK beta-barrel domain-like 103 186 IPR011037 -
Trre1g02469 527 PANTHER PYRUVATE KINASE 20 511 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Trre1g02469 527 NCBIfam pyruvate kinase 30 517 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02469 Trre-Chr1 19995212 20000419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02469 K00873 - gmx:100801466 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02469 1 19995212 20000419 Trre1g02469 1 19995212 20000419 ECH
Trre13g04400 13 51584956 51590699 Trre1g02469 1 19995212 20000419 PCT