Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01341 ATGTCAGAGGTTTATACTGTTAAGGTTGAGGAAGGAAGGCCTGCTACATCTAATGGAAAGCCATCAGTAGGACCTGTCTATAGATGCATTTATGCCAAAGATGGTCTTTTGGAGTTGCCTTCTGGTTTAGAGTCACCATGGGATTTCTTCAGGGATTCTGTTAAGAGGAACCCCGACAACCAAATGCTTGGAAGGCGTCAAAAACACGAATCTAAGGCAGGACCTTATTCATGGTTCACATATAAAGAGGTCTATGATGCTTCCATCCAAATGGGATCTGCCATGAAAAGCCGCGGTGTTAATCCTGGAGACCGTTGTGGCATATATGGAGCTAACTGTCCCGAATGGATCATTGCAATGGAGGCTTGCAATAGCTCTGCAGTAACATATGTTCCATTATATGACACTCTTGGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCAATTGCATTTGTGCAGGAAAATAAGATTCCATCAATTTTGTCATGTCTTAATCAGTGTTCTTCAAATCTCAAAACTATTGTGAGCTTCGGAAATATTTCTGCCCCACAAAAGAAGGAAGCTGAGGAATATGGTACAACCTGCTTCTCCTGGGAAGAGTTTCTCCAGTTGGGAAGTTTGGATTGGGATCTACCACCAAAAAATAAGACAGACATTTGCACAATAATGTACACAAGTGGAACAACTGGTGAACCTAAAGGTGTCATTATTAAGAATGAGGCTTTCATGTCTGAAGTGTTATCTATTGACCAAATTATTAGGCTAACGGACAAAGTGGCAGCAGACGACGATGTATACTTCTCCTTTCTTCCTCTTGCTCATGTATACGACCAGATAATGGCGACCTATTGCATCTTCAAAGGTTCCTCAATAGGATTTTGGCAAGGCGATGTCAGGTTCTTGATGGAAGATGTTCATGCATTGAAACCAACTATATTTTGTGGTGTTCCGAGAGTTTTTGACCGTATTTGTGCCGGTATCAAAAGCAAAGTTTCATCTGCTGGATCACTACAAAGTGCATTATTTCAGTATGCATACAACTATAAGTTAAAATATCTAGAGAAGGGTCTTCCACAAGATAAAGCAGCACCTCTGTTTGATAGGCTTGTGTTTGATAAGACAAAACAAGCTCTAGGTGGACGCGTTCGTATCCTGTTATCAGGAGCTGCGCCTTTGCCTATACATGTCGAGGAGTGTTTGAGAGTTGTTAGTGGATCCACATTATCACAAGGATACGGTCTTACCGAAAGTTGTGCTGGGTGTTTCACAGCAATCGGCGATGTGTTTTCTATGATGGGAACAGTTGGTATTCCCATGACAACCATTGAGGCCAGGCTTGAATCTGTACCAGAGATGGGATATGACGCACTTTCCAGTGAACCCCGTGGTGAAATTTGCCTGAGAGGAAATTCTTTGTTCTCTGGTTATCACAAGCGACAAGACCTTACTGAAGAAGTTATGGTTGATGGTTGGTTTCATACAGGCGATATCGGAGAATGGCAACCAAATGGAGCCATGAAAATTATTGATAGGAAAAAGAATATCTTTAAATTGTCTCAAGGAGAATACATTGCTGTAGAGAATATTGAAAGCAAGTATCTACAATGTCCTCTTATAACATCGATTTGGGTATATGGAAACAGTTTTGAGTCATTCTTAGTGGCTGTGGTGGTTCCTGAAAGAAAGGCTCTTGAGGATTGGGAAGTAGAGCACAATTTTACTGGTGATTTTAAATCTTTATGTGAAAATCTAAAGGCTAGAACATACATTTTGGATGAGCTCAAAAGTACTGGTCAGAAACTCCAACTTAGAGGATTTGAGCTGCTGAAAGCTATTTATCTGGATCCTTCTCCTTTTGACATAGAGAGAGATCTAGTAACTCCAACATTTAAATTGAAGAGACCACAGTTACTGAAATACTACAAGGATCAGATAGATGAACTATACAAGGAAGCAAAGGGAACAATGGCATGA 1986 0.4058 MSEVYTVKVEEGRPATSNGKPSVGPVYRCIYAKDGLLELPSGLESPWDFFRDSVKRNPDNQMLGRRQKHESKAGPYSWFTYKEVYDASIQMGSAMKSRGVNPGDRCGIYGANCPEWIIAMEACNSSAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQENKIPSILSCLNQCSSNLKTIVSFGNISAPQKKEAEEYGTTCFSWEEFLQLGSLDWDLPPKNKTDICTIMYTSGTTGEPKGVIIKNEAFMSEVLSIDQIIRLTDKVAADDDVYFSFLPLAHVYDQIMATYCIFKGSSIGFWQGDVRFLMEDVHALKPTIFCGVPRVFDRICAGIKSKVSSAGSLQSALFQYAYNYKLKYLEKGLPQDKAAPLFDRLVFDKTKQALGGRVRILLSGAAPLPIHVEECLRVVSGSTLSQGYGLTESCAGCFTAIGDVFSMMGTVGIPMTTIEARLESVPEMGYDALSSEPRGEICLRGNSLFSGYHKRQDLTEEVMVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYIAVENIESKYLQCPLITSIWVYGNSFESFLVAVVVPERKALEDWEVEHNFTGDFKSLCENLKARTYILDELKSTGQKLQLRGFELLKAIYLDPSPFDIERDLVTPTFKLKRPQLLKYYKDQIDELYKEAKGTMA 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01341 661 CDD LC-FACS_euk 74 654 IPR045311 GO:0004467|GO:0006631
Trre1g01341 661 ProSitePatterns Putative AMP-binding domain signature. 226 237 IPR020845 -
Trre1g01341 661 Gene3D - 41 515 IPR042099 -
Trre1g01341 661 SUPERFAMILY Acetyl-CoA synthetase-like 43 654 - -
Trre1g01341 661 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 653 - -
Trre1g01341 661 Pfam AMP-binding enzyme 50 523 IPR000873 -
Trre1g01341 661 Pfam AMP-binding enzyme C-terminal domain 533 601 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01341 Trre-Chr1 10051424 10056443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01341 5 657 Acyl Lipid Metabolism Gene Families AT1G64400 55.505 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01341 K01897 - gmx:100779735 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01341 1 10051424 10056443 Trre1g01341 1 10051424 10056443 ECH