Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01154 ATGGTGTTTTACATACTTGCCCTCTTCATTTGGTTGTTGTTCCTATTTTCTGAAGTGACTCTTCAGTCTTTTCAGTGTATGAGTTGCAAGCAACTAAGAAGTGTTGTAGTATTTCAAGGGAAGAGTGGATATTCAAACTTTTTCTACAGAAAAATGAGGTGTTGTAATTTTCTTCCTTTTAGATTTTCGAAAATGTGTTACCGGATGGCACATAAATGTACAGATAAGAAATTTGTGGAAACAAACCAACATGGTGTAAATGGCGGGTTAAAGTTGCCTAAGAAGGTATTTGCTCTTATGGATCATAACATCCCTGGCCTAATTGGAAATAGAAGTGGTGAAATGGAATCTAAAATGAATCTGAAAGATGGAGTAGATGATTTTGACACATCCTTGATATGTAAGATGTTTCCATCAATTACTTTTGGTAGTGCCCCTCAAGTGGATTTGTATGATGGGACCACAACATATTCTGAAACAAATATCATTTCGGAAACCAAAGATTTTGAACAGCATTTATATGATTTTTCAGAGGTAAGGGAGGTGCAAAATACTGTCTCTGAAGCATTGCCTTCTTTGCATGTTAATCATTCTAGTGTACAATCTTTGGCATTAGGAAAAGATGATTCTTTTCCTTGTCCTGTAAGCCCCCAAACAGTGTCTTCAATATATGAAGAAAAATTGGATCAAGTTACTAGGGAGGATTCTCCAAAGAAAGTCGGGCTGCCGTCACAATCAAACCTTACACTTAATGAGTTATATCTCGACAAATCTGTTAATTGCATACCTGGATTAACCAAGAAGCAATGCGAGCAACTAGATAACTGCGGGCTTCACACGTTACGGAAATTGCTGCACCATTTTCCGCGATCATATGCCAATCTACAGAATGCACATGCTAAAATTGAGGATGGGCAGTATTTGATCTTTGTTGGACAAGTCTTATCTTCAAGGGGTGTTAAAGCTAGTTGTTCATTTTCATTTCTTGAGGTGATTGTTACTTGTCAGATTGTAGACAGGGAATCAGCTATTGAGCATGTCACTGGCAAAGTTGGGCAAAAGAAGACAATTTATTTGCATTTGAAGAGATTTTTCCGTGGCACACGTTTTACTTTTAAACCTTTCCTTAATAGTATTGCAAACAAGTATCAAGTCGGAGACGTAACATGTGTGAGTGGCAAGGTTAGGACTATGTATGCTAAAGACCACTACGAGATGAGAGAATATAATATTGATGTGCTTGAAGATGGAAAAGATTTATCCCTTTGTGCTAAAGAGAGACCATATTGTATCTACCCTTCAAAAGGAGGTATAAACCCAGTATTTCTCCGGGACATTATTGCAAGAGCTTTACATGCCTTGCCAGTCAATGTTGATCCAATTCCTAAAGATATCACAGAGGAGTTTGGACTCTTAACTCTTCATGATGCGTATTTTGGAATTCACAAGCCAAAGGATATTAGTGATGCTGATCTGGCCCGCAAGCGACTTATATTTGATGAATTTTTTTACCTGCAGTTAGGACGATTATTCCAAATGCTCGAAGGTCTTGGTACACAAATAGAAAAAGATGGATTGCTAGATAAGTATAAAAGACCAGAAAATAACACCGTGTATACAGAGGAATGGTCCTGTCTCACCAAGAAGGTTTTGGATCTCCTTCCCTATACTCTTACTCCCGGTCAACAGCAAGCTATTTCAGAAATTATTTGGGATTTAAAAAGGCCAGTTCCAATGAATCGGCTACTGCAGGGTGATGTTGGATGTGGGAAAACTATTGTTGCTTTTCTTGCCTGCATGGAGGTTATTGGCTCTGGCTATCAGGCTGCTTTCATGGTTCCTACCGAGTTGCTTGCAATCCAGCATTATGAACATTTGCTTACCTTGCTTGAAAATTTGGACGAGGTCAAGCCGACTATTGCTTTACTCACTGGTTCAACCCCACTAAAACAATCGCGGATTATTCGCAATGGTATCCAGACTGGAGAAATTTCAATGGTCATTGGAACCCAAAGTTTGATAGCAGAAAGTGTGGAGTTCTCAGCCTTACGTATTGCTGTGGTGGATGAGCAGCATCGCTTTGGTGTGATTCAAAGAGGAAGATTTAACAGTAAGTTATTTTATAAATCTCCAATTTCGAGTATGGAAGATGCTATTACAGACGGGTCCTCAAAGAGTGATGATTATATGGCTCCTCATGTTCTTGCCATGTCTGCTACTCCCATCCCAAGGACACTTGCGCTTGCTTTATATGGTGATATGTCACTGACACAGATAACTGACTTACCACCAGGAAGAATTCCTGTTCAAACATATACCATTGAAGGAAGTGACAAAGGATTTGAGGATGTCTACAAGATGATGATGGATGAGTTGGAAGATGGGGGGAAAGTTTATCTTGTCTACCCAATTATTGACCTTTCGGAACAGTTACCTCAGCTTCGTGCTGCTTCTGCAGATCTCGAAGTTATCTCAGACCGGTTTCCAGGATACAATTGTGGTTTATTACATGGGAGAATGAAAAGTGATGAAAAAGAAGAAACATTAGGGAAGTTCAGGACTGGAGAATTGCATATACTACTTGCCACTCAAGTAATTGAAATTGGTGTTGATGTTCCAGATGCGTCGATGATGGTTGTAATGAATTCTGAGAGGTTTGGAATGGCCCAATTACACCAACTCAGGGGCCGAGTTGGACGCGGAACAAGGCAGTCAACATGTATATTAGTAGCATCAACTGCCACTGGCCTTAATCGTCTGAAGATATTGGAGCAATCATCAGATGGTTTTCATCTCGCTAATATGGACCTGTTATTACGTGGACCTGGTGACTTACTTGGCAAGAAACAATCTGGACATCTTCCCGAGTTTCCCATTACCAGATTGGAAGTGGATGGGAATATTTTACAAGACGCACACACTGCTGCACTGAAAATTTTAAGTGCTTCCCATGATCTTGAGCATTTTCCTGCACTTAAACTGGAGCTTGGCATGAGACAACCGCTTTGCCTACTAGGTGACTGA 3024 0.3995 MVFYILALFIWLLFLFSEVTLQSFQCMSCKQLRSVVVFQGKSGYSNFFYRKMRCCNFLPFRFSKMCYRMAHKCTDKKFVETNQHGVNGGLKLPKKVFALMDHNIPGLIGNRSGEMESKMNLKDGVDDFDTSLICKMFPSITFGSAPQVDLYDGTTTYSETNIISETKDFEQHLYDFSEVREVQNTVSEALPSLHVNHSSVQSLALGKDDSFPCPVSPQTVSSIYEEKLDQVTREDSPKKVGLPSQSNLTLNELYLDKSVNCIPGLTKKQCEQLDNCGLHTLRKLLHHFPRSYANLQNAHAKIEDGQYLIFVGQVLSSRGVKASCSFSFLEVIVTCQIVDRESAIEHVTGKVGQKKTIYLHLKRFFRGTRFTFKPFLNSIANKYQVGDVTCVSGKVRTMYAKDHYEMREYNIDVLEDGKDLSLCAKERPYCIYPSKGGINPVFLRDIIARALHALPVNVDPIPKDITEEFGLLTLHDAYFGIHKPKDISDADLARKRLIFDEFFYLQLGRLFQMLEGLGTQIEKDGLLDKYKRPENNTVYTEEWSCLTKKVLDLLPYTLTPGQQQAISEIIWDLKRPVPMNRLLQGDVGCGKTIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEHLLTLLENLDEVKPTIALLTGSTPLKQSRIIRNGIQTGEISMVIGTQSLIAESVEFSALRIAVVDEQHRFGVIQRGRFNSKLFYKSPISSMEDAITDGSSKSDDYMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPVQTYTIEGSDKGFEDVYKMMMDELEDGGKVYLVYPIIDLSEQLPQLRAASADLEVISDRFPGYNCGLLHGRMKSDEKEETLGKFRTGELHILLATQVIEIGVDVPDASMMVVMNSERFGMAQLHQLRGRVGRGTRQSTCILVASTATGLNRLKILEQSSDGFHLANMDLLLRGPGDLLGKKQSGHLPEFPITRLEVDGNILQDAHTAALKILSASHDLEHFPALKLELGMRQPLCLLGD 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01154 1007 SMART ultradead3 554 770 IPR014001 -
Trre1g01154 1007 Pfam DEAD/DEAH box helicase 559 744 IPR011545 GO:0003676|GO:0005524
Trre1g01154 1007 SMART helicmild6 805 902 IPR001650 -
Trre1g01154 1007 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 52 1002 IPR047112 GO:0006281
Trre1g01154 1007 SUPERFAMILY Nucleic acid-binding proteins 254 455 IPR012340 -
Trre1g01154 1007 Gene3D - 769 940 IPR027417 -
Trre1g01154 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 763 IPR027417 -
Trre1g01154 1007 Gene3D - 514 760 IPR027417 -
Trre1g01154 1007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 783 938 IPR001650 -
Trre1g01154 1007 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 927 985 IPR045562 -
Trre1g01154 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 957 IPR027417 -
Trre1g01154 1007 Pfam Helicase conserved C-terminal domain 785 901 IPR001650 -
Trre1g01154 1007 NCBIfam ATP-dependent DNA helicase RecG 276 976 IPR004609 GO:0003678|GO:0006281|GO:0006310
Trre1g01154 1007 CDD DEXHc_RecG 497 763 - -
Trre1g01154 1007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 572 759 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01154 Trre-Chr1 8794779 8808281 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01154 K03655 - gmx:100806552 1459.51