Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01057 ATGGTGACAGGACAAGATTTATACAACGTGATGTGTTCAATGGTACCTCTATATTTTGCAATGCTAGTTGCTTATGGTTCAGTAAAGTGTTGCAAAATGTTCACTTCAGATCAATGTTCAGGCATAAACCGATTTGTGGCAGTTTTTGCTGTTCCAGTTCTCTCTTTTCATTTTATTTCTCTAAACAATCCTTATCAAATGGACATTAAATTCATCTTAGCAGATACAATTTCTAAGCTTATTGTTCTCTTTTTTCTTTCCATTTGGGCTATTTTCTTTACTAAAGGCTCATTGGATTGGCTCATTACTTTGTTCTCAGTTGCTACCTTGCCTAATACCCTTGTTATGGGTATCCCTTTACTTGAAGCTATGTATGGTGATTTCACACAAACTCTCATGGTGCAACTAGTTGTCCTTCAATGCATCATATGGTATACTTTGCTTCTCTTCCTATTAGAATACAGAGCTGCCAAACTCTTGATCAAAAACTCATTCCCAGGAACCACGGCAGCCTCCATAACAAAATTCGAACTCGACAGCGATGTAATTTCCCTCTACGGCCAAGACGCACCGCTCACAACTCAATCAGAAACCGATGAAAATGGACGAATCAAAGTTCGAATCCGACGATCCATTTCCTCAGCACCACCAGAATCAACCTCATCAATAACCAACACCATTACTCCTACAAGACTCTCTAATCTATCCAATGCCGACATTTTCTCCATCAACACGCCGATGAATTTTCTCGACAATGCTAGTCCGCGTCTCTCAGGTTATGCTTCAACCGATGCTTATTCGTTGCAGCCAACGCCTCGGGGGTCTAATGTTAATGAAACGGATGTGATTGGTACGCCGGTGTTGGGGAGATCGCCGGTGGGTGGAGGGAGGGGTTTACGGGGGAATTCACCGGTGGTGGATCGAGGGAGGGTGGTTTGGGAGTCGCCGGAGAAATGGCGGGTGGAAGAGAGACAAGGATGCAAGGACATTACTATGTCAGATAAGGAAATTAGCTTCAGAGACAGTCTTAAAGTCTCAGTGGCAGGGGAAGCTGTGGACCCTAAGAGTTACCAGAAAATGCCATATGCCTTTGTAATGTTAAGGCTTATACTTACTGTTGTTGGAAGAAAACTTTCTCGTAATCCTAATACATATTCTAGTATATTAGGACTTCTCTGGTCTCTAATCTCCTTCAAATGGAATATAGAAATGCCTAGTTTGATCAAATCATCTATCAAAATCATATCTGATGCAGGTCTTGGGATGGCAATGTTTAGCTTAGGCCTTTTCATGGCACTTCAGCCTCGTATTATTGCTTGTGGTACTAAAAAAGCAGCCATGGGAATGGCCATCAGATTCCTATGTGGTCCTCTTGTAATGTCATTATCATCCATTGTCATTGGATTGAGAGGAAAGAAACTTCATACAGCCATTGTACAGGCTGCTCTTCCACAAGGGATAGTACCATTTGTGTTTGCAAGAGAATATGGGCTGCATCCTGATATTTTGAGCACAGGGGTTATCTTTGGCATGTTAGTTTCCTTGCCAATAACTCTCATTTATTACATATTTCTTGGCTTGTGA 1584 0.4173 MVTGQDLYNVMCSMVPLYFAMLVAYGSVKCCKMFTSDQCSGINRFVAVFAVPVLSFHFISLNNPYQMDIKFILADTISKLIVLFFLSIWAIFFTKGSLDWLITLFSVATLPNTLVMGIPLLEAMYGDFTQTLMVQLVVLQCIIWYTLLLFLLEYRAAKLLIKNSFPGTTAASITKFELDSDVISLYGQDAPLTTQSETDENGRIKVRIRRSISSAPPESTSSITNTITPTRLSNLSNADIFSINTPMNFLDNASPRLSGYASTDAYSLQPTPRGSNVNETDVIGTPVLGRSPVGGGRGLRGNSPVVDRGRVVWESPEKWRVEERQGCKDITMSDKEISFRDSLKVSVAGEAVDPKSYQKMPYAFVMLRLILTVVGRKLSRNPNTYSSILGLLWSLISFKWNIEMPSLIKSSIKIISDAGLGMAMFSLGLFMALQPRIIACGTKKAAMGMAIRFLCGPLVMSLSSIVIGLRGKKLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPITLIYYIFLGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01057 527 MobiDBLite consensus disorder prediction 267 282 - -
Trre1g01057 527 MobiDBLite consensus disorder prediction 267 301 - -
Trre1g01057 527 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 526 - -
Trre1g01057 527 Pfam Membrane transport protein 10 522 IPR004776 GO:0016020|GO:0055085
Trre1g01057 527 NCBIfam auxin efflux carrier 1 527 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01057 Trre-Chr1 7983930 7991276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01057 1 505 Organic Solute Cotransporters AT1G77110 62.522 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01057 K13947 - gmx:100800139 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01057 1 7983930 7991276 Trre1g01057 1 7983930 7991276 ECH