Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01056 ATGCCACCAGAAAAACTTGAAATTTTCAAATCACTAGAAAACTGGGCATCTGAATCTGTTTTACCATTGCTTAAGCCTGTGGAACAATGCTGGCAGCCACAGAATTTTCTCCCTGATCCTTCATTGAAATTCGATGAATTTACTGATCAGGTAAAGGCCCTTCGTGATCGCACGAAGGACCTTCCTGATGAGTATTTTGTTGTGTTGGTTGGTGATATGGTGACGGAAGACGCACTTCCGACATATCAAAGTATGATTAATGGTCTTGATGGTGTTGGTGATGAGATTGGTTCGAGTCCAAGCCCGTGGGCCGTTTGGACACGGGCTTGGACCGCTGAAGAAAATAGACATGGTGATTTGCTTAGGACTTATTTGTATCTTTCGGGTCGGGTTGATATGGAGAAGATTGAGAAAACTGTTCAATACCTCATTGGAGCTGGCATGGACCCAGGGACTGAAAACAACCCTTACTTGGGATTTGTATACACATCATTCCAAGAGCGAGCGACATTCGTATCACATGGTAACACGGCTCGCTTAGCGAAAGAAGGTGGTGATCCCGTGCTTGCGCGCATATGTGGTACCATTGCGGCAGACGAGAAGCGTCATGAGAATGCATACTCAAAAATTGTGGAGAAGCTTCTAGAAGTGGACCCTAACGGAGCAATGCTAGCCATTGGTGATATGATGGAGAAAAAAATCACAATGCCGGCACACCTTATGTACGATGGACAAGACCCTAAGCTATTTGAACATTTTGCGGCCGTCGCGCAGCGTACCGGAGTGTACACAGCCAATGATTATGCTGATATCTTGGAGTTTTTAATCGAACGGTGGAGATTGGAGAAGCTGGAAGGATTAACGGCTGATGCAAAAAAGGCGCAGGATTTCGTGTGTGGGCTAGCGCCGCGGATTAGGAGGCTGCAAGAGCGTGCTGATGCACGTGCTCGTAAGATGAAACCACATGGGGTTAAGTTTAGTTGGATTTTCAATAATGAGGTTATTTTGTAA 1011 0.457 MPPEKLEIFKSLENWASESVLPLLKPVEQCWQPQNFLPDPSLKFDEFTDQVKALRDRTKDLPDEYFVVLVGDMVTEDALPTYQSMINGLDGVGDEIGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMEKIEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSKIVEKLLEVDPNGAMLAIGDMMEKKITMPAHLMYDGQDPKLFEHFAAVAQRTGVYTANDYADILEFLIERWRLEKLEGLTADAKKAQDFVCGLAPRIRRLQERADARARKMKPHGVKFSWIFNNEVIL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01056 336 CDD Acyl_ACP_Desat 4 312 IPR005067 GO:0006631|GO:0045300
Trre1g01056 336 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 1 334 IPR005067 GO:0006631|GO:0045300
Trre1g01056 336 SUPERFAMILY Ferritin-like 1 335 IPR009078 -
Trre1g01056 336 Gene3D Ribonucleotide Reductase, subunit A 1 336 IPR012348 GO:0016491
Trre1g01056 336 Pfam Fatty acid desaturase 4 330 IPR005067 GO:0006631|GO:0045300
Trre1g01056 336 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 1 336 - -
Trre1g01056 336 PIRSF Dlt9_acylACP_des 1 336 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01056 Trre-Chr1 7979625 7981756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01056 1 334 Acyl Lipid Metabolism Gene Families AT1G43800 79.104 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01056 K03921 - gmx:100037478 608.216