Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00831 ATGTCTCGTGTGTATGTGGGTAATCTGGATTCGAGAGTTACGGAGAGGGACCTTGAAGATGAATTCCGTATTTTTGGTGTTATTCGAAGTGTTTGGGTTGCTCGGAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCGCAGGATGCTATTCGCGAACTAGATGGTAAGAATAATTGGAGGGTAGAGCTCTCTCACAATTCTAGAAATGGTGGTGGTGGTGGTGGAGAAAGAGGCGGCGGTCGTGGTCGTGGAGGTGGTGGTGGTGGGTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAACCGTGGTGCTGGTGGAGGAAGACGCCGTAGCCGTAGTCCACCTAGATTTCGTAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCACCCAGGCGCCGTAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGCGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCAGAAGCAGAAGTTGA 570 0.5211 MSRVYVGNLDSRVTERDLEDEFRIFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNNWRVELSHNSRNGGGGGGERGGGRGRGGGGGGSDLKCYECGEPGHFARECRNRGAGGGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00831 189 CDD RRM_SRSF3_like 3 71 - -
Trre1g00831 189 MobiDBLite consensus disorder prediction 103 118 - -
Trre1g00831 189 MobiDBLite consensus disorder prediction 66 189 - -
Trre1g00831 189 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Trre1g00831 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Trre1g00831 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 71 IPR000504 GO:0003723
Trre1g00831 189 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Trre1g00831 189 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Trre1g00831 189 SUPERFAMILY Retrovirus zinc finger-like domains 90 115 IPR036875 GO:0003676|GO:0008270
Trre1g00831 189 Gene3D - 99 153 - -
Trre1g00831 189 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Trre1g00831 189 Gene3D - 1 98 IPR012677 -
Trre1g00831 189 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Trre1g00831 189 SMART rrm1_1 3 69 IPR000504 GO:0003723
Trre1g00831 189 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
Trre1g00831 189 FunFam Serine/arginine-rich splicing factor RSZ22A 95 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00831 Trre-Chr1 6298339 6301087 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00831 K12896 - sspl:121745482 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00831 1 6298339 6301087 Trre1g00831 1 6298339 6301087 ECH