Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00830 ATGTATGAACCAAAGAACATTCTAATAACTGGTGCTGCTGGCTTCATAGCCTCACATGTAACCACTAGGCTAATTAATAGGTATCCTAGCTACAAGATTGTAGCTCTTGATAAGCTAGATTATTGCTCAAATTTCAAGAATCTACAATCATGCACATCATCACCAAAGTTCAAATTCATCAAGGGTGATATATGTTCAGCTGATATTGTGAATCATCTATTAATAGAAGAGGAAATAGACACAATAATGCATTTTGCTGCACAAACTCATGTTGATAATTCATTCGGAAACTCGATGGAATTCACCTACAATAACATATATGGAACACATGTTCTTCTTGAAGCATGCAGGGCTACAAATTGTGTTAAAAGGTTCATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATTTAGATACCGAAATCGGAAACCATGAAACATCTCAGCTTTTACCAACAAATCCTTATTCTGCTACAAAAGCAGGTGCTGAAATGTTGGTTATGGCTTATCATAGATCTTATGGTCTTCCAATTATAACTTCTAGAGGAAATAATGTTTATGGTCCTAACCAATATCCTGAAAAACTTGTTCCTAAATTCATCTTACTTGCTATGAAAGGCGAAAAGTTGCCGATTCATGGTGATGGATCCAATGTGAGAAGCTATCTTCATTGTGGTGATGTTGCAGAAGCATTTGATGTTATACTTCATAAAGGAGTAATAGGTCAAGTTTATAATATTGGTACTCAAAAAGAAAGAAGTGTGTTAGATGTAGCAGAAGAAATTTGCAAACTTTTTAAGTTGGATCCTAAAGGAGTGATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTTTGGATGATCAAAAGCTTAAGAAGCTTGGTTGGGAGGAGAAAACACCTTGGACAGAAGGACTTAAGATGACAATTGATTGGTACAAAAATAATCCGGACTGGTGGGGAGATGTATCGACCGCTTTGAACCCTCATCCGCGTTTCTCGGCGATCAATCTCTCCGATGAAGCTCAATGGTCTTTCCAATATGGATACTCGAGGCTTTTAAGGTCGTTTACTGATGTCGGCCGAAAGGATCCAGGATTGAAGTTTTTGATATATGGTAGGACAGGTTGGATTGGTGGGTTGTTAGGGAAGCTTTGTGATGAGGAGAGAATTTCTTGGGAGTATGGGAGAGGAAGATTACAAGATAGGAGATCAATTTTGGAGGACATAAAGAGGGTTATGCCAACACATGTTTTGAATGCGGCTGGTGTGACAGGAAGGCCTAATGTTGATTGGTGTGAATCACATAAAGTTGAAACAATAAGGACTAATGTAGTAGGGACACTAACTTTGGCTGATGTTTGCAAAGAAAGTAATATATATGTCATGAATTTTGCAACTGGTTGCATTTTTGAGTATGATAAAGAACATCCTCTAGGATCAGGCATTGGATTCAAGGAAGAGGATAAGCCAAATTTCATTGGTTCCTTTTATTCAAAGACCAAAGCCATGGTGGAGGAGCTCCTAAAAGAATATGACAATGTTTGCATATTGAGAGTTAGAATGCCAATATCATCAGATTTAAGCAATCCAAGAAACTTCATAACAAAGATAAGTCGTTACAACAAAGTGGTAAACATACCTAATAGTATGACAGTGCTAGATGAACTTTTACCAATATCAATTGAAATGGCTAAGAGAAACTTAAAAGGTATATGGAATTTCACAAATCCAGGAGTTATAAGTCACAATGAGATATTAGAATTGTATAGGGATTACATAGATCCTTCATTTAAATGGGAGAATTTTGATTTGGAGGAACAAGCTAAGGTAATTGTTGCACAAAGGAGCAACAATGAAATGGATGGTTCTAAGCTCAAAAAAGAGTTTCCTGAATTGTTGTCTATCAAAGATTCTGTTATCAAGTTTGTGTTTGAGCCTAACAAGAAAACTTGA 1968 0.3633 MYEPKNILITGAAGFIASHVTTRLINRYPSYKIVALDKLDYCSNFKNLQSCTSSPKFKFIKGDICSADIVNHLLIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRATNCVKRFIHVSTDEVYGETDLDTEIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGVIGQVYNIGTQKERSVLDVAEEICKLFKLDPKGVIEFVQDRPFNDKRYFLDDQKLKKLGWEEKTPWTEGLKMTIDWYKNNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLLRSFTDVGRKDPGLKFLIYGRTGWIGGLLGKLCDEERISWEYGRGRLQDRRSILEDIKRVMPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKESNIYVMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEYDNVCILRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVISHNEILELYRDYIDPSFKWENFDLEEQAKVIVAQRSNNEMDGSKLKKEFPELLSIKDSVIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00830 655 Gene3D - 198 320 - -
Trre1g00830 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 370 632 IPR036291 -
Trre1g00830 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Trre1g00830 655 Pfam RmlD substrate binding domain 372 544 IPR029903 -
Trre1g00830 655 Gene3D - 364 655 - -
Trre1g00830 655 Gene3D - 7 311 - -
Trre1g00830 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 336 - -
Trre1g00830 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Trre1g00830 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Trre1g00830 655 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 362 655 - -
Trre1g00830 655 FunFam UDP-glucose 4,6-dehydratase 7 209 - -
Trre1g00830 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00830 Trre-Chr1 6292452 6294752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00830 6 317 Miscellaneous Gene Families AT4G00110 26.269 1.91e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00830 K12450 - gmx:100776241 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00830 1 6292452 6294752 Trre1g00830 1 6292452 6294752 ECH