Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00821 ATGCTTCTAAATCAAGCTTTCTCTTCATTCCACTCAAAGCCACTTCATTCTTCATACATTCCTCTCTCTTCTTCTTCATCTTCTCCGATACGGCGTCGTTCGGTGAAAACAACAATTCCTCGCAAAACAAATCTCAAAATTCTCACATCACGCATAGTTCAACTCACTCGCCGTAAACAGCTTCGCCAGATTTTTAATGAAATTGAGGTTGCAAAGAATCAGTTTGGGAAGTTGAATACGATTGTGATGAATGCAGTTATTGAAGCTTGTGTTCGTTGTGGTGATATTGAATCAGCTATTAGAATTTTTGATGAGATGAAAAATCCTGAATCTTGTGGTGTGGATACTGTTACGTATGCTACGATTTTGAAGGGTTTAGGCAAGGCACATAGATTTGATGAAGCTTTTCGATTGCTTGAATCTGTCGAAAATGGTACTGCTGTGGGAAGTCCAAAGTTGTCAGCACCATTGGTCTTCGGCTTGCTAAATGCCTTAACAGAAGCAGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCCTGTTATGGTTCTGTGCTTCGTGAAGGCGAACATTTTTCAGTCTCAGTATACAACCTTCTAATAAAGGGGCATATAAACTCAGGCTGTCCTGACACTGCAATAAACATGTTCAATGAAATTTTACATCAAGGAATAATGCCTGACAGGCTCACATATAACACACTGATTTTAGCATGTGTTCAGAGTGAAAAGTTGGATGTTGCCATGCAATTATTTGCGGAAATGAAGGAAAAAGCGCAGAAATTCATCCATGGTGATCTGTTTCCAGATATCGTTACATATACAACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTCGTTTCAGTTGTGGAAATAGTGCTGGAAATGAAATCACGTTCTGAGTTATACATTGATAGAACTGCTTACACTGCAATGGTTGATGCTTTACTAAGATGCGGCTCTGTTAAGGGTGCTCTGTGTATTTTTGGAGAAATACAGAAGCAGATTGGTTGTAATCCAGAGTTGAGACCAAAGCCTCATCTCTATCTTTCTATGATGCGTGCCTTTGCTTTTCGAGGAGATTATGATCTGGTTAAAAATCTGCATAAGCGGATTTTACCAGATACAGTAGGAACCATTATACCAGTTTCTCAAGAAGAATCCGACCACCTTCTAATGGAAGCAGCCCTGAACGCTGGCCAGGTTGATGTTGCTATTAAAACTCTTACATATATTCTTTCAAGATGGAAGGGCATATCCTGGACAAGTCATGGAGGCATGGTTGCTTCTCGTATTGAGGCCTTATTAGGATTCTCAGCATCTTTATTCAATCCTTTCTTACTTCCTCAGGTTTTGCCTTCTGAACCGATTGAGGGTTTCATGATACCATTTGAAGCAACGCGGCCACTACAAGGTACCATAAAGCTGAGGGATGTGGTACAACGTTTCTTTAATGATGCAGTAGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTTTTGCACCGCGAAGACTGCAATCAGTTGGATGCTCCACTTTCAACAATGATGAGAAGCCCTCCTCCCAGTGTTTCGGCTACAACATCTGTTGGTCATGTAATTGACTTAATTTTGGAAAAGCGTTACCCAATGGTTATCATTGTAAATTGCACCGATGTGTTTGCTACTACATACGGCTGTAGAGCGATTGGAGTTTTTACATTAGTACAATTGAATAGGCTTATCAAACCTGTATCTGAAGAGAAAAGGGATAGACCTTTCACTCTGCAGAAGATGATAACATAA 1788 0.4083 MLLNQAFSSFHSKPLHSSYIPLSSSSSSPIRRRSVKTTIPRKTNLKILTSRIVQLTRRKQLRQIFNEIEVAKNQFGKLNTIVMNAVIEACVRCGDIESAIRIFDEMKNPESCGVDTVTYATILKGLGKAHRFDEAFRLLESVENGTAVGSPKLSAPLVFGLLNALTEAGDLRRANGLLACYGSVLREGEHFSVSVYNLLIKGHINSGCPDTAINMFNEILHQGIMPDRLTYNTLILACVQSEKLDVAMQLFAEMKEKAQKFIHGDLFPDIVTYTTLLKGFGQAKDLVSVVEIVLEMKSRSELYIDRTAYTAMVDALLRCGSVKGALCIFGEIQKQIGCNPELRPKPHLYLSMMRAFAFRGDYDLVKNLHKRILPDTVGTIIPVSQEESDHLLMEAALNAGQVDVAIKTLTYILSRWKGISWTSHGGMVASRIEALLGFSASLFNPFLLPQVLPSEPIEGFMIPFEATRPLQGTIKLRDVVQRFFNDAVVPIVDEWGSCTGLLHREDCNQLDAPLSTMMRSPPPSVSATTSVGHVIDLILEKRYPMVIIVNCTDVFATTYGCRAIGVFTLVQLNRLIKPVSEEKRDRPFTLQKMIT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00821 595 ProSiteProfiles CBS domain profile. 517 586 IPR000644 -
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 299 IPR002885 -
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Trre1g00821 595 Pfam PPR repeat 308 334 IPR002885 -
Trre1g00821 595 Gene3D Tetratricopeptide repeat domain 150 261 IPR011990 GO:0005515
Trre1g00821 595 Gene3D Tetratricopeptide repeat domain 23 149 IPR011990 GO:0005515
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
Trre1g00821 595 SUPERFAMILY CBS-domain pair 455 550 IPR046342 -
Trre1g00821 595 Pfam Pentatricopeptide repeat domain 265 298 IPR002885 -
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Trre1g00821 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Trre1g00821 595 PANTHER OS09G0431600 PROTEIN 23 588 IPR044781 -
Trre1g00821 595 Gene3D Tetratricopeptide repeat domain 262 435 IPR011990 GO:0005515
Trre1g00821 595 NCBIfam pentatricopeptide repeat 83 107 IPR002885 -
Trre1g00821 595 NCBIfam pentatricopeptide repeat 117 141 IPR002885 -
Trre1g00821 595 NCBIfam pentatricopeptide repeat 230 257 IPR002885 -
Trre1g00821 595 NCBIfam pentatricopeptide repeat 271 300 IPR002885 -
Trre1g00821 595 NCBIfam pentatricopeptide repeat 195 227 IPR002885 -
Trre1g00821 595 NCBIfam pentatricopeptide repeat 308 340 IPR002885 -
Trre1g00821 595 Pfam PPR repeat family 79 127 IPR002885 -
Trre1g00821 595 Pfam PPR repeat family 193 238 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00821 Trre-Chr1 6222508 6228905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00821 45 397 Miscellaneous Gene Families AT4G11690 22.652 2.07e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00821 - - gmx:100813146 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00821 1 6222508 6228905 Trre1g00821 1 6222508 6228905 ECH