Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00803 ATGGGATTCAAAAGCTCTTCTCTTTTTTATTTGGGTTTTTTCCTTGCAATCTCATCTTCCATTCATGCATTTAACATCACAAAGTTGTTAGATCAAAATCCTGATTTTGCCACCTTCAACAAATACCTCACCGAAACCAAGCTTGTTGACCAAATCAACCACCGCAACACCATCACTGTCCTCGCCGTTAGTGATGCCGGTCTCTCGGCCATCTCGGGGAAATCTCCAGAGGTTATCAAGGCCATCATAAGCACCCATGTGATCCTTGACTATTTCGATTTAAAGAAGCTCATGGAGGCTCAAGGTAGTGGTCGACTGTTAACCACACTTTACCAAGCCTCAGGCCTCGCTGTTAACCAACAAGGGTTCATTAAGGTTAAACTCATCGGTGAGGGTTCGATGGCCTTTGGATCTGCTGTGAAAGGTGCTCCAATCGATGCCGAGCTCGTCAAAACCGTCGTCTCTCAACCCTACAACATTTCCATACTCCAAGTTAACAAACTTATTGTGACTCCTGGAATTGATTCACAAACCCCACCCCCACCTTCTAACGGACAACCTCCTGCTGCGGCAAAGGCTCCTGTGCCAACTAAGGGTGGCAAAGCTGATGCTCCCACAACTGGAGCTCAGACTCCTTCTTCAGAGGAAGTGTCTGCTCCTTCACCTTCTGAAGTTGTCACAGACTCCCCAGCTGAAGCCCCAGCAGCTGATGCATCTAGCCCATCTTTGGCTCCTGGACCTGATGGTAGTGAGGCAGCTGCAGATGCCGAAACTCCTAGCAGCTCTTCAAGGACTATTGTAGGTTTGATTGGAGCATTGATGTGCTTCGCTTCTCTCTTGATTGTTATGTAG 852 0.4765 MGFKSSSLFYLGFFLAISSSIHAFNITKLLDQNPDFATFNKYLTETKLVDQINHRNTITVLAVSDAGLSAISGKSPEVIKAIISTHVILDYFDLKKLMEAQGSGRLLTTLYQASGLAVNQQGFIKVKLIGEGSMAFGSAVKGAPIDAELVKTVVSQPYNISILQVNKLIVTPGIDSQTPPPPSNGQPPAAAKAPVPTKGGKADAPTTGAQTPSSEEVSAPSPSEVVTDSPAEAPAADASSPSLAPGPDGSEAAADAETPSSSSRTIVGLIGALMCFASLLIVM 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00803 283 ProSiteProfiles FAS1/BIgH3 domain profile. 23 169 IPR000782 -
Trre1g00803 283 Gene3D FAS1 domain 23 168 IPR036378 -
Trre1g00803 283 FunFam Fasciclin-like arabinogalactan protein 3 23 169 - -
Trre1g00803 283 Pfam Fasciclin domain 34 121 IPR000782 -
Trre1g00803 283 MobiDBLite consensus disorder prediction 204 225 - -
Trre1g00803 283 SUPERFAMILY FAS1 domain 30 170 IPR036378 -
Trre1g00803 283 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 179 IPR033254 -
Trre1g00803 283 MobiDBLite consensus disorder prediction 173 262 - -
Trre1g00803 283 MobiDBLite consensus disorder prediction 175 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00803 Trre-Chr1 6055471 6056322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00803 - - gmx:100798739 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00803 1 6055471 6056322 Trre1g00803 1 6055471 6056322 ECH