Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00785 ATGCTCCTAGCTTACGCTCACAACAACAATCTCCCAGCAGCAATCAATCTTTTCCACCAAATCCCATCAAACACTAAAGACACAATCTCATGGAACTCCATCATCAAAGCTTCAATCATATGTGGTGATTTTGTCACTGCAGTTAAACTGTTTGATGAAATGCCGCACAGAAATTCAATCTCATGGACAACAATAATCCATGGTTTTTTATCAACCGGGAGAGTTGCTGAAGCTGAAAGATTCTTCCATGCAATGCCTTATGCTGATAAAGATGTTCCCACGTGGAATGCTATGGTTAACGGTTACTGTAATAACGGTAGAGTTGAGGATGCTCTTCGTTTGTTTCGTCAAATGCCTTCTCGTGATGTTATTTCTTGGACTTCAATTATTGCTGGGTTGGATCGTAATGGAAAGAGTTATCAAGCGTTGATTTTTTTGCAGAACATGGTGGGTTCTTTTGGTGTTGAAATTTCTTCAACTACTTTGGTTTGTGGGTTGTCTGCTGCGGCTAAAATTTCGGATTTTTACGCGGGTATCCAGATTCATTGTTGTATGTTTAAGTTTGGTTATTGTTGTGGTTTTGATGAGTTTGTGTCAGCTTCACTTGTTACTTTTTACGCGTGTTGTAAGAGGATGGATGATGCTTGTAGGGTATTTCGGGAGATTCTTTGTAAGAACGTGGTGGTTTGGACTGCTCTTTTGACTGGGTATGGTCTGAATGATAAGCATGTGGAGGCATTGGAGGTTTTTGGTGAAATGATGAGATTCAATGTGGTGCCTAATGAGTCTTCTTTTACTAGTGCTTTGAATTCTTGTGTTGGGTTGGAGGATCTTGAGAAGGGCAGAGTGATTCATGCTGCAGGAATTAAGATGGGTTTGGAAAATGGGGTCTATGTGGGGAATTCTCTTGTTGTTATGTATAGTAAATGTGGTTTTATTGGTGATGCATTATCTGTGTTTAGGGGGATTGGTGAGAAGAATGTCGTGTCTTGGAATTCTGTGATTGTTGGTTGTGCTCAGCATGGATGTGGAGTGTGGGCTTTGGTACTTTTTAAACAAATGTTGATGGAAGGTGTCGAGTCTGATGAGATCACGTTGACCGGTTTGCTTTCTGCTTGTAGCAGGTCTGGGATGTTAGAAAAGGCGAGGTGTTTTTTTGAGTACTTTGGTCGGAAAAGATCGATGAAGCTGACGGTCGAGCACTATGTTTGTATGGTGGATGTACTTGGCCGGTGTGGAGAGGTGAAGGAAGCAGAAGCGTTGGCTATGAACATGCCTGTTGAAGCAAACTCAATGGTATGGCTGGTTTTGCTGAGTGCGTGTAGGCTGCATTCTAATTTGGATGTTGCGGAAAGAGCTGCAAAACGGATATTTGATATGGAGCCTGGTTGTAGTGCTGCATATGTGTTGCTCTCGAACTTGTATGCATCTTCGAGAAGATGGTCTGAAGTAGCAAGGATTAGGAGAGAAATGAAACATAATGGAGTGAGAGCACTTCCTATACGTATATTATCTGTGGGAAAGAAGCGATCACGTGGACTGCAACTCATGGTTGACGAGTATGTTGAAAAGATCAAATACTATTGCAGTGTTGAGGATGTTCTAATTCGATCAAATCCCAGAAATGCACGTGACCAAAGGGCTCAGGTTGATGACGAAGACATGGCAGTGATGAATCATATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACATGGAAAAGATCTACGGTCTGAGCAAATGGCAGAGTTGGTGGCTGATGCAGGAAATACTGGTGCTTCACGTATATCTTTCTGTATTGGTGGACCCTATGGTCATGGAAGAAAAATAAGGGAACGTGCTAACTTATCAATCAAGTTATCTTCAATGGTCTTAAATCATCAAATAGCATTACTTGTGCTTGTAGAACAGCTTTACAGGTCATGGACAATTTTAAGGGGACAAAAGTACCATCATTAG 1962 0.4154 MLLAYAHNNNLPAAINLFHQIPSNTKDTISWNSIIKASIICGDFVTAVKLFDEMPHRNSISWTTIIHGFLSTGRVAEAERFFHAMPYADKDVPTWNAMVNGYCNNGRVEDALRLFRQMPSRDVISWTSIIAGLDRNGKSYQALIFLQNMVGSFGVEISSTTLVCGLSAAAKISDFYAGIQIHCCMFKFGYCCGFDEFVSASLVTFYACCKRMDDACRVFREILCKNVVVWTALLTGYGLNDKHVEALEVFGEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENGVYVGNSLVVMYSKCGFIGDALSVFRGIGEKNVVSWNSVIVGCAQHGCGVWALVLFKQMLMEGVESDEITLTGLLSACSRSGMLEKARCFFEYFGRKRSMKLTVEHYVCMVDVLGRCGEVKEAEALAMNMPVEANSMVWLVLLSACRLHSNLDVAERAAKRIFDMEPGCSAAYVLLSNLYASSRRWSEVARIRREMKHNGVRALPIRILSVGKKRSRGLQLMVDEYVEKIKYYCSVEDVLIRSNPRNARDQRAQVDDEDMAVMNHIRSDDWVVMLDEHGKDLRSEQMAELVADAGNTGASRISFCIGGPYGHGRKIRERANLSIKLSSMVLNHQIALLVLVEQLYRSWTILRGQKYHH 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00785 653 Pfam PPR repeat 91 118 IPR002885 -
Trre1g00785 653 Pfam PPR repeat 29 57 IPR002885 -
Trre1g00785 653 Pfam PPR repeat 60 85 IPR002885 -
Trre1g00785 653 Pfam PPR repeat 401 421 IPR002885 -
Trre1g00785 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Trre1g00785 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Trre1g00785 653 Gene3D Tetratricopeptide repeat domain 89 173 IPR011990 GO:0005515
Trre1g00785 653 Gene3D Tetratricopeptide repeat domain 1 88 IPR011990 GO:0005515
Trre1g00785 653 Gene3D Tetratricopeptide repeat domain 174 280 IPR011990 GO:0005515
Trre1g00785 653 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 72 118 IPR046960 GO:0003723|GO:0009451
Trre1g00785 653 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 298 511 - -
Trre1g00785 653 Gene3D Tetratricopeptide repeat domain 281 396 IPR011990 GO:0005515
Trre1g00785 653 SUPERFAMILY alpha/beta knot 500 651 IPR029028 -
Trre1g00785 653 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 499 653 IPR003742 GO:0006364|GO:0008168
Trre1g00785 653 SFLD SPOUT Methyltransferase 472 653 - -
Trre1g00785 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Trre1g00785 653 FunFam Pentatricopeptide repeat-containing protein 180 285 - -
Trre1g00785 653 Pfam PPR repeat family 225 272 IPR002885 -
Trre1g00785 653 Pfam PPR repeat family 326 374 IPR002885 -
Trre1g00785 653 Pfam E motif 444 500 IPR046848 -
Trre1g00785 653 Gene3D - 498 653 IPR029026 -
Trre1g00785 653 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Trre1g00785 653 NCBIfam pentatricopeptide repeat 228 262 IPR002885 -
Trre1g00785 653 NCBIfam pentatricopeptide repeat 60 85 IPR002885 -
Trre1g00785 653 NCBIfam pentatricopeptide repeat 94 123 IPR002885 -
Trre1g00785 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 27 61 IPR002885 -
Trre1g00785 653 CDD RlmH-like 501 653 IPR003742 GO:0006364|GO:0008168
Trre1g00785 653 Pfam Predicted SPOUT methyltransferase 501 652 IPR003742 GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00785 Trre-Chr1 5920375 5925401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00785 44 509 Glycoside Hydrolase AT3G49170 31.225 3.01e-72 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00785 - - gmx:100806042 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00785 1 5920375 5925401 Trre1g00785 1 5920375 5925401 ECH