Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00781 ATGACTCGTGGTAAAAATAAAAGACACAGACAAGGGGATGATGATTCTGGAACTTCTGAAATATTGAGGAAAATACACAAAACAGGTGTTGCAACTGATGATGATATGAACCAACTGTATATGATTACGAAGCCGGTCTGTTCAGGCTGTCGTGTTAATACTAAAGACAACCCGAATTGCTTTTGTGCTTTGGTTCCACCTCCTAGTGGAACCCGGAAGTCTGGAATATGGCAGAAGAGATCTGATTTTGTTGATAGTCTTGGCTTTGACCCAAACACGGAACTTCGTGAATCTGCTAATTCACCTGCAGGACTAACAAATCTTGGAGCAACGTGTTATGCTAATAGCATACTCCAATGCTTGTATATGAATAAACATTTCCGAGAAGGATTGTTTTCTGTAGAACCAGATGTTTTACAGCAGGAACCGGTGTTGGATCAACTGGCTCGCCTTTTTGCACAGTTGCATTTAAGTAAAAAGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAATTAGACAATGAAGTTCAGCAGGATAGCCACGAGTTCCTGACATTGCTTCTGTCGTTGCTTGAGCGTTGCCTTAGACATTCCAAAATTTCCAAGGCAAGAACGATAGTTCAAGATCTTTTCCGTGGAAGTGTGTCTCATGTTACAACGTGTTCGCAATGCGGAAAAGACTCTGAATCTTCTTCCAAAATGGAAGACTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAGAGCTTAGACGATTACCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCATGTAAAACAAGAGTTGACGCTACGCGCAGCATCAAGCTACGAACATTACCCGACGTGCTTAATTTTCAGCTTAAGCGCTATGTCTTTCTTCCAAAGACAACAACAAAGAAGAAAGTTACTTCTCCATTTTCATTTCCTGCTGAACTTAGTATGCACCACAGATTGTCTGAGCCATCTCGGTCTGAATTGATATATGACTTGTCAGCTGTACTGATACACAAGGGAACTGCGGCTAATAGTGGTCATTACATTGCTCATATCAAGGATGAAAACACTGGGCAATGGTGGGAATTTGATGATGAGGTTGTTACTAACTTGGGCCGTTCTCCATTTTCCGAAGAAATTTCATGCTCTGCTTCTAAATCTGGTAAGAATGATGTAGATCATTCCAGTTTATCTGAAGCAAGGGTAGCTGACAGTAATGGAATTGGTTTAAATGTCAAAGTTTCACAATCTTCACTTACGGAGACGTTTTCATCTAGCGATGCATACATGTTGATGTACCATCTTAAGCAAAACAAATTTTTTAGTGAGAATGGGGGCATGGTTTCTAGTGATAACCATACTAAAAGAGACATTGGTTCAGTTACTGCACAAGATAATGATTGTCTTCCTTCTCATTTTCGTGAAGAGATTCAAAATTTCAATGCCTCATATCTTGATGCTTGCCAGCAGTACGACCATAAGAAAGAGGTAGAATTGAGTCATATCAATGAGAGGAGAGAAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTACAGCCACTGGAGCAACCATTTTTTTGGATTTATAGTGACTGGCTTCGCCAATGGGCCGAAAATGTTACTCCAAGTGCTATTGACAACACATCTATCCAATGTTCACATGGTAAAGTCCCAGTGTCAAAGGTTACCTCGGCAAAGCGATTGTCTTCTAAAGCATGGGCAAGATTATTGTCTAAGTATGGTGGGGGTCCAATACTTTCTCATGATGACCGCTGTTTGGATTGTCTGATTGATGGGGCTCGGAATGTCGTGTCAGCTGACACTTACCGGGATCGAAGAGAATCATTTAAGCAACTTGCACGGGATATTCTTGATGGAAAAAATGAAGATGGAAAGTACTATGTCTCTAGATCATGGTTGCAGCAATGGTGGAAAAGAAAAGTCACCGATGCTCCATCTGAAGCCGATTCTGGACCGACAGCAGCTATTAGTTGTCCACATGGACAACTTATGCCTGAGCAAGCAACTGGTGCTAAACGAGTGCTTGTTCCTGAGGGTTTTTGGCACTTCTTATATGAAGATGCTGTTTCTGTGAAAAACGATGATCTTCTGGTCTGCCCTACTTTTCCTTCAGACTCCGGAGAGTGCTCCAAATGCAGTAGCGAATTATCTGAAGTGGCTTGCATGGAGGACTCTATGAGGTTATTAAAGCAGAGGCAGCGTCAGAGTCATGAGAAACTGTTCAGTGGGAAAAGTATGCCACTCTCTCTAGATTGCAAGTATTTCTTAATTCCTTCCTCTTGGATTTCAAAATGGAGAAACTATGTCAACCCAACAGTCAAGAATTCCGATACACCTGAAACATTAAATCCGGTGATTGGTTCACTGATGTGTGAAAAGCACTCACGACTCATTGAAAGGCCTCCTGAACTGATTTTCAGACGTGGTGCTATAATTCCAAGAGAGCCTTCTGCTAGTGGCTTGACCATCATATCTGAGAATGATTGGAAATGTTTTTGCGAAGAATGGGGTGCTACTGAGACCCAAGGAGTATCTGCAAAGATTGAGAATATTAATGATTCGGTGAATGCTATAGCTGGATCTTGTGAAGAGATGGTGATATGTGAGGACCAGTTGGCCAATTGGGATAAGGTGAATAATGAAAGTGGGAACGGTCAAGTTTTAATCAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAAGGAAAGCTGTGAGTTAGTGCATAAACTTAATTATTGCAATGAGGATATATGTGTAATTCTTGTCCGTGGAAAGGAGGTTCCTAGATCAATCTTGGAGGCTTCAAAGGGATTCGTTGAAACAGATCGAAGGGTTTCTAAACGCTCCAGGAAGACTAGAAATGGGACTTCAACTAATCTAAAAGTATCTGCTTCAACATCAATTTACCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAAGAAAACCAGATACTACAAAAAGGTGATATAACCATTGATAACAACGACGAAAATACTACACTTGTGGACGTCAACATATTTGCTGGAGATCAGATTATTGTGAGGGACTCTGAGATCCATGAGAATCGAGACATTGCTGATGAGCTGTGTAACGAGAAAAAGGGTACACAGCATACTGAGGGAGGGTTTCGTGGAACACTTTTAACTTCAAATGTTTCATCTCAGGTTGTTTAG 3240 0.4093 MTRGKNKRHRQGDDDSGTSEILRKIHKTGVATDDDMNQLYMITKPVCSGCRVNTKDNPNCFCALVPPPSGTRKSGIWQKRSDFVDSLGFDPNTELRESANSPAGLTNLGATCYANSILQCLYMNKHFREGLFSVEPDVLQQEPVLDQLARLFAQLHLSKKAFIDSSPFVKTLELDNEVQQDSHEFLTLLLSLLERCLRHSKISKARTIVQDLFRGSVSHVTTCSQCGKDSESSSKMEDFYELELNVKGLKSLDESLDDYLTVEELNGDNQYFCESCKTRVDATRSIKLRTLPDVLNFQLKRYVFLPKTTTKKKVTSPFSFPAELSMHHRLSEPSRSELIYDLSAVLIHKGTAANSGHYIAHIKDENTGQWWEFDDEVVTNLGRSPFSEEISCSASKSGKNDVDHSSLSEARVADSNGIGLNVKVSQSSLTETFSSSDAYMLMYHLKQNKFFSENGGMVSSDNHTKRDIGSVTAQDNDCLPSHFREEIQNFNASYLDACQQYDHKKEVELSHINERREEVRSVLAEAPVQPLEQPFFWIYSDWLRQWAENVTPSAIDNTSIQCSHGKVPVSKVTSAKRLSSKAWARLLSKYGGGPILSHDDRCLDCLIDGARNVVSADTYRDRRESFKQLARDILDGKNEDGKYYVSRSWLQQWWKRKVTDAPSEADSGPTAAISCPHGQLMPEQATGAKRVLVPEGFWHFLYEDAVSVKNDDLLVCPTFPSDSGECSKCSSELSEVACMEDSMRLLKQRQRQSHEKLFSGKSMPLSLDCKYFLIPSSWISKWRNYVNPTVKNSDTPETLNPVIGSLMCEKHSRLIERPPELIFRRGAIIPREPSASGLTIISENDWKCFCEEWGATETQGVSAKIENINDSVNAIAGSCEEMVICEDQLANWDKVNNESGNGQVLIKTCPEVCESCIGEKESCELVHKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTRNGTSTNLKVSASTSIYQLKMMIWESFGVVKENQILQKGDITIDNNDENTTLVDVNIFAGDQIIVRDSEIHENRDIADELCNEKKGTQHTEGGFRGTLLTSNVSSQVV 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00781 1079 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g00781 1079 ProSiteProfiles DUSP domain profile. 617 719 IPR006615 GO:0004843
Trre1g00781 1079 SUPERFAMILY DUSP-like 635 703 IPR035927 -
Trre1g00781 1079 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 73 444 - -
Trre1g00781 1079 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 340 358 IPR018200 GO:0004843|GO:0006511
Trre1g00781 1079 ProSiteProfiles DUSP domain profile. 745 865 IPR006615 GO:0004843
Trre1g00781 1079 FunFam Ubiquitin carboxyl-terminal hydrolase 26 501 599 - -
Trre1g00781 1079 Pfam Ubiquitin carboxyl-terminal hydrolase 104 443 IPR001394 GO:0004843|GO:0016579
Trre1g00781 1079 SUPERFAMILY Ubiquitin-like 970 1037 IPR029071 -
Trre1g00781 1079 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 103 446 IPR028889 -
Trre1g00781 1079 SUPERFAMILY DUSP-like 516 599 IPR035927 -
Trre1g00781 1079 CDD Ubl_USP48 969 1072 IPR044743 GO:0004197|GO:0004843|GO:0016579
Trre1g00781 1079 Gene3D - 740 863 IPR035927 -
Trre1g00781 1079 ProSiteProfiles DUSP domain profile. 510 602 IPR006615 GO:0004843
Trre1g00781 1079 CDD Peptidase_C19L 104 443 IPR033841 GO:0004843
Trre1g00781 1079 Gene3D Cysteine proteinases 89 446 - -
Trre1g00781 1079 SUPERFAMILY Cysteine proteinases 100 446 IPR038765 -
Trre1g00781 1079 Gene3D - 501 599 IPR035927 -
Trre1g00781 1079 SMART dusp 528 604 IPR006615 GO:0004843
Trre1g00781 1079 FunFam ubiquitin carboxyl-terminal hydrolase 48 90 446 - -
Trre1g00781 1079 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 104 119 IPR018200 GO:0004843|GO:0006511
Trre1g00781 1079 Gene3D - 968 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00781 Trre-Chr1 5892830 5900836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00781 82 381 Miscellaneous Gene Families AT4G31670 28.438 2.25e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00781 - - tpra:123898934 1945.63