Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00778 ATGGCAACAGTTTCAAAGATATCGTCACTATTGTCATCATCATTAGCAACAATAATATCATCCAAACCTAAACCTAAACCTAAACCTAAATTCATTCATCATCATATCAATTCCTTTCTTCTCTCTGCTTCAATTCTCAGAGCCTTTAGCAGCACCGCCGGCGGCGGAGGTATGAGAATGACAAAGACGACGAAGAAGAAAACAGAAGCAGCACTTGCTAAGGAAAAAAGACGAACTCGTTCCGATAAACAACTCGATGAGGATACAATAGTTGAGCTTTACAACAATAATTCACATCTTCATATTCCTGTTTTGCTTTCTGAAGTTTTGGATGTCTTCTCTAATTCTTCGTTAAACTCTTTCGTTGATTGTACTCTCGGTGCTGCCGGTCACTCCACCAATGTGATTAGAGGACATCCAGAGTTGAAATATTTTGTCGGGATGGATGTGGATCCCGTGGCAAGTGACGTAGCTCAATCACGCATCAGTTCAGTTTTGGACGATAGGGAGTCTAGTGTGAAAGTATTTACCGTGTTAAGGAATTTTAGACACATCAAGTCCGTGCTTAGAGGAACAGGCGAGGAACACTTAGGGCCATCGTCTGTTGATGGCATCTTGATGGACCTGGGAATGTCATCTATGCAGGTGGACGATCCTCAAAGAGGATTCAGTGTGCTTGGTGATGGACCACTTGATATGCGCATGGATCCTCAGGCAAGCCTTAAAGCAGAAGACATATTAAATTCTTGGCCAGATACTGAAGTAGGCCGTATCCTAAGGGATTATGGGGAAGAAAGTAATTGGCGTACTCTGCAGAAAAAAATTGTCCAAGCCCGTTTAGAAGGTGGATTACATTCCACTACTGACTTGCTGGATCTTATTCGGCGTGTGACTCCTGCAATGAAAGGTGGAAGACAAGGTTGGATAAAAACAGCAACCCGTGTATTTCAAGCACTGAGAATTGCTGTCAACGATGAACTGAAGACTCTTGAGGACTCGCTGTATTCTTGTTTTGACTGCCTTGCACCGGGGGGCAGACTTGCTGTCATATCTTTTCACAGTTTGGAGGACAGAATTGTGAAGCAGACATTTCTTAATATAATCAAACAGAATGATAACGTGGGAGAAGGGGAGGGCAGCAATAGTGATCTTAGGAAGATAATTGATGAAATCAAAGAAAAAGAAGCATGGATAAAACAAGTACTGCATGGATCAAATGGAATAATTCTCACAAAAAGACCAATCACGCCGTCAGGAGAAGAAGAGATCTTGAACCGCCGAAGTAGAAGTGCAAAGCTCAGAGTTATTCAGAAGCTTTGGAGATAA 1326 0.4231 MATVSKISSLLSSSLATIISSKPKPKPKPKFIHHHINSFLLSASILRAFSSTAGGGGMRMTKTTKKKTEAALAKEKRRTRSDKQLDEDTIVELYNNNSHLHIPVLLSEVLDVFSNSSLNSFVDCTLGAAGHSTNVIRGHPELKYFVGMDVDPVASDVAQSRISSVLDDRESSVKVFTVLRNFRHIKSVLRGTGEEHLGPSSVDGILMDLGMSSMQVDDPQRGFSVLGDGPLDMRMDPQASLKAEDILNSWPDTEVGRILRDYGEESNWRTLQKKIVQARLEGGLHSTTDLLDLIRRVTPAMKGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGGRLAVISFHSLEDRIVKQTFLNIIKQNDNVGEGEGSNSDLRKIIDEIKEKEAWIKQVLHGSNGIILTKRPITPSGEEEILNRRSRSAKLRVIQKLWR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00778 441 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 101 439 IPR029063 -
Trre1g00778 441 Gene3D Vaccinia Virus protein VP39 101 436 IPR029063 -
Trre1g00778 441 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 101 439 IPR002903 GO:0008168
Trre1g00778 441 MobiDBLite consensus disorder prediction 54 81 - -
Trre1g00778 441 FunFam Ribosomal RNA small subunit methyltransferase H 219 326 - -
Trre1g00778 441 NCBIfam 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH 97 438 IPR002903 GO:0008168
Trre1g00778 441 SUPERFAMILY Putative methyltransferase TM0872, insert domain 221 324 IPR023397 GO:0008168
Trre1g00778 441 Gene3D Putative methyltransferase TM0872, insert domain 219 326 IPR023397 GO:0008168
Trre1g00778 441 Pfam MraW methylase family 100 438 IPR002903 GO:0008168
Trre1g00778 441 MobiDBLite consensus disorder prediction 62 81 - -
Trre1g00778 441 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 95 439 IPR002903 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00778 Trre-Chr1 5883714 5887402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00778 K03438 - gmx:100803819 573.933