Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00741 ATGCATTCTCAGAAGCCTCATCGCATACTATTATTCTCCCTTCGTACATTGCTATCACCATCATCAACCCTCAAATCAAACCCTAACCCCATTCATTCATCTCCATTCTCTTCCTCATGGCTTTCCCAACCCGGAAACCCACTCATCCACTGGCCATCCCTTCCACCCATCCAACCCAAACCCGCTTCAACTCCAACCCTAAACTCCCCCACAACCACCCCCAATTTCTCCCCAAACGATTTCTCCCTCATTTCCAATCTCTTCATCAACCCATCCATCTCACCCGGTTTATCTCTCCATACAGAACTCACTCTCACCGGAATCAAACCAACTTCCCCTCTTCTCCGCGCTGTCTTCGATCACTTTGCCTCCTCGCCCAAACTACTACACTCGCTTTACCTCTGGGCTGAGAATCAACCCGGGTTTAAACCCGATTCAGCTCTGTTTGATTCAGTCATCAACGCTCTTGCGAAAATGAGGGAGTTTCATTCTGCTTGGAGTCTTATTCTTGATCGAATTGATAGAGATGATGGAGAAAAAGAACAAGAAGAGAAGTTGGTTTCTGTTGGTACTTTTGCTATCATGATTCGACGTTATGCTCGTGCAGGTATGCACAATGTCGCTATTAGGACATTTGAGTTTGCAAAAGATAAGAAATCAATTTTGAATTCAGCGTCGGAAATGAGTTTGTTTGAGATATTGACTGATGCACTCTGCAAAGAAGGGTCTTGTAGGGAAGCTTCAGAGTATTTTCTTAGGAGAAAGGAGACAGACTTGGGCTGGGTTCCTTCGGTTCGGGTTTATAACATAATGTTAAATGGATGGTTTCGAGCGAGGAATCTCAAACATGCTGAGAGACTTTGGAAAGAGATGAAGAAGGAGAATGTGAGACCTAGTGTTGTGACATATGGTACCCTTGTGGAAGGATACTGTCGGATGCGCCGGGTTGAAAAGGCGCTTGAGATGATTGGTGAAATGACCGAAGAGGGAATTCAACCAAATGCAATTGTATATAATCCCATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCTTTGGGTATGATTGAGCGTTTTCATGTTTTGCAAATAGGTCCTACTCTTTCAACTTATAATTCACTAGTGAAGGGTTTTTGTAAGGCAGGAGATTTAGAAGGTGCAAGTAAAATTCTTAAAAAGATGATAAGTAGAGGTTTCCTTCCAATCCCCACTACTTATAATTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGACGAAGGGATGAACTTGTATACCAAGATGATTGAATCTGGTCATAATCCAGATCGTCTAACTTACCATCTCGTGTTGAAGATGTTATGTGAAGAGGAGAAATTAGAGTTGGCAGTTCAAGTTAGCAAAGAAATGAGGCATAAAGGTCATGACATGGACTTGGCTACGAGTACTATGTTAACTCATTTGCTATGCAAAATGCATAAGTTGGAAGAGGCTTTTGCAGAATTTGAGGACATGATAAGAAGAGGTTTAATTCCTCAATATCTTACATTTCAAAAATTGAATGTTGAGTTAAAGAAACAAGGAATGACTGAAATGGCTCGAAAACTTTGCCAATTGATGTCGTCTGTTCCCCATTCTACCAACTTGCCAAATACATATGGTGAAGTCAGAGATGATGCACATGCGCGTAGAAAATCTATAATTCAAAAAGCCAAAGCAGTTTCTGATTTGCTTAAGGACCCCAAAGAACTTGACAAGTTTAGAAGTTCATCAGAAAATGCTGTCTCAAGTGCAAACTGTTTGATAGAGGATATTGAGAAACGATAG 1815 0.4116 MHSQKPHRILLFSLRTLLSPSSTLKSNPNPIHSSPFSSSWLSQPGNPLIHWPSLPPIQPKPASTPTLNSPTTTPNFSPNDFSLISNLFINPSISPGLSLHTELTLTGIKPTSPLLRAVFDHFASSPKLLHSLYLWAENQPGFKPDSALFDSVINALAKMREFHSAWSLILDRIDRDDGEKEQEEKLVSVGTFAIMIRRYARAGMHNVAIRTFEFAKDKKSILNSASEMSLFEILTDALCKEGSCREASEYFLRRKETDLGWVPSVRVYNIMLNGWFRARNLKHAERLWKEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMIGEMTEEGIQPNAIVYNPIIDALAEAGRFKEALGMIERFHVLQIGPTLSTYNSLVKGFCKAGDLEGASKILKKMISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEKLELAVQVSKEMRHKGHDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGLIPQYLTFQKLNVELKKQGMTEMARKLCQLMSSVPHSTNLPNTYGEVRDDAHARRKSIIQKAKAVSDLLKDPKELDKFRSSSENAVSSANCLIEDIEKR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Trre1g00741 604 Pfam PPR repeat family 407 451 IPR002885 -
Trre1g00741 604 Pfam PPR repeat family 263 312 IPR002885 -
Trre1g00741 604 Gene3D Tetratricopeptide repeat domain 230 326 IPR011990 GO:0005515
Trre1g00741 604 Gene3D Tetratricopeptide repeat domain 327 399 IPR011990 GO:0005515
Trre1g00741 604 MobiDBLite consensus disorder prediction 53 72 - -
Trre1g00741 604 NCBIfam pentatricopeptide repeat 267 299 IPR002885 -
Trre1g00741 604 NCBIfam pentatricopeptide repeat 301 335 IPR002885 -
Trre1g00741 604 NCBIfam pentatricopeptide repeat 336 363 IPR002885 -
Trre1g00741 604 NCBIfam pentatricopeptide repeat 372 403 IPR002885 -
Trre1g00741 604 NCBIfam pentatricopeptide repeat 407 439 IPR002885 -
Trre1g00741 604 Pfam PPR repeat 368 396 IPR002885 -
Trre1g00741 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 263 536 - -
Trre1g00741 604 Pfam PPR repeat 479 506 IPR002885 -
Trre1g00741 604 Pfam PPR repeat 337 360 IPR002885 -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Trre1g00741 604 Gene3D Tetratricopeptide repeat domain 400 575 IPR011990 GO:0005515
Trre1g00741 604 SUPERFAMILY HCP-like 263 462 - -
Trre1g00741 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00741 Trre-Chr1 5607599 5610555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00741 114 536 Miscellaneous Gene Families AT4G11690 24.706 6.25e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00741 - - gmx:100793484 849.351