Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00740 ATGGCTACTCTTTCTGAAGCCTATAGAGATCACCCTCTTCACCTCAATCATATTATCCCCTTAGACTTTTCTTCATTTAGAACTTTACCTGATTCTCATGCATGGCCTCAATCTAATGATGATGCTAATGATCATTTCACATCCAATGGATGCCATGATGATGAAGATAGGTCATGCATACCAATCATTGATCTCAATGATCCTAATGCAATGGAACACATAGGCCTTGCTTGTGAGAATTGGGGTGCCTTCCAATTGAAGAATCATGGCATACCCTTAAATTTAATTGAAGAGGTTGAAGAGGAGACAAAGAGACTATTTTCACTTCCCTCCAAGGAGAAACTTAAGGCCCTTCGATCGGCCGGTGGCGCCACCGGATACGGCAGAGCTCGGATATCACCATTCTTCCCCAAATACATGTGGCATGAAGGATTTACAATTATGGGGTCCCCCTCCAATGATGCCAAAAAAATCTGGCCTAATGACTACAAACGATTTTGTGACATAATGGAGAGCTACCAAAAGCAAATGAAGACATTAGCAGAGAAACTAACAAACATAATATTCAACATATTAGGAATTTCCAAAGAACAAAACAAATGGGTTGGTTCAAACAACCATTGTGGAGCAATTCAACTAAATTTCTACCCATGTTGTCCAGACCCAAAAAAAGCAATGGGCCTGGCCCCACATACAGACACATCACTTTTCACAATTCTACATCAAAGTCAAACAAATGGACTTCAAATATTCAAAGAAGGTGTAGGGTATGTTCCTGTGGACCCTCATCCAAATACACTTGTTGTTAACACTGGTGACATTCTTCATATATTGTCAAATTCAAGGTTTAGATGTTCTCTTCATCGTGTTGTTGTGAATGAAATTAAGGATAGATATTCTGTGGCTTATTTTTATGGACCCCCAATTGATTATTTGGTTAGTCCTATTGTTGGTGATAATAATTCTTTGCCACATTTTCGTGCTTTGACTGTTAAGGATTATATTGGGATTAAAGCCAATAATTTAGGGGGTGCTTTGTCTTTGATTAGTACATGTAGTAAATTACTTGATCATGTTGACTAA 1083 0.3841 MATLSEAYRDHPLHLNHIIPLDFSSFRTLPDSHAWPQSNDDANDHFTSNGCHDDEDRSCIPIIDLNDPNAMEHIGLACENWGAFQLKNHGIPLNLIEEVEEETKRLFSLPSKEKLKALRSAGGATGYGRARISPFFPKYMWHEGFTIMGSPSNDAKKIWPNDYKRFCDIMESYQKQMKTLAEKLTNIIFNILGISKEQNKWVGSNNHCGAIQLNFYPCCPDPKKAMGLAPHTDTSLFTILHQSQTNGLQIFKEGVGYVPVDPHPNTLVVNTGDILHILSNSRFRCSLHRVVVNEIKDRYSVAYFYGPPIDYLVSPIVGDNNSLPHFRALTVKDYIGIKANNLGGALSLISTCSKLLDHVD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00740 360 SUPERFAMILY Clavaminate synthase-like 17 342 - -
Trre1g00740 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 60 334 - -
Trre1g00740 360 FunFam Gibberellin 3-beta-dioxygenase 1 17 337 - -
Trre1g00740 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 204 307 IPR005123 -
Trre1g00740 360 Pfam 2OG-Fe(II) oxygenase superfamily 211 307 IPR044861 -
Trre1g00740 360 Pfam non-haem dioxygenase in morphine synthesis N-terminal 60 160 IPR026992 -
Trre1g00740 360 Gene3D - 16 341 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00740 Trre-Chr1 5596867 5599635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00740 54 334 Glycosyltransferase AT5G59530 30.421 3.42e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00740 K04124 - gmx:100780857 540.806