Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00720 ATGCGACGCACTCCTCCGACTATCCATTTCCTCGCCGCCACCGACTCCGCCTTCTCCACCGCCACAATGTCTTCACGCCCTTACCACCGAGGTCACCATAGAGGATACTCCGGCCGCTCAAATTCCGGCGGTAGAGGCCATTTCGTTACCGGCGACGATCATTTACAGTCAGTCCGCGACGCCAATTTAGCACTCCGGCGAGGTGAGAGTGAAAACTTTGCGAATCAATCGCAGTTCCATCAGAATCCACCTTACAATCTGAGTCGTCATCCTCCTCCGCCGTTTTACTATCAGAATCCACCTTACAATCCTCGTCCTCATCCACCGCCTCAATATCAGAATCCATCTTATATTCCAAGACCTCATCCTTATCCTCATCCTCATCGACCGCCGCATTTTCGGCAGCCGAATGATTACCGACGTGAATTTCGTCCACAGCAGAATATTCGCCCAAAGGCTCCGGATCATCGAGAGTGGGAGGTTGCTTTGACGCCACCGCCAGCTCGTCATAGTGAAAGGTTTAAAGTCCTTTCCTATAATATATTGGCTGACTACCTTGCTATGGACCACTGGAGACAACTTTATTATCACATACCTTCTTACATGTTGAACTGGCAGTGGAGAAAGAGTAAAATTATTTTTGAGCTTGGCTTGTGGTCTGCCGATATCATGTGTTTTCAGGAGGTTGATAGATTTGACGAGTTGGCGGAGGACTTGAAGTTTAAGGGATACAGAGGCATCTGGAAGATGCGTACAGGCAATCCAGTTGATGGTTGTGCAATCTTTTGGCGAACATCAAGGTTCAACTTGTTATATGAAGAAAGCATCGAGTTCAATAGGTTTGGACTCAGAGACAATGTTGCTCAAATATGTGTATTAGAGTTCATTAATCAAAATGGATCTCTCCCACCCAGCTTGACAGGTTCTCGTAAGGTTGTAGTTTGCAACACTCATGTGCTTTACAATCCAAATAGAGGGGAAATTAAGCTTGGCCAGGTCAGAATCCTACTGGATAAGGCTCAAGCTGTATCTCAACTTTGGAATAACTCCCCTGTTATTATCTGCGGGGATTTTAATTGTACCCCTAAGAGTCCATTGTACAACTTTATCGCAGAACAAAAGTTAGATCTATCTGGAATAGATAGGAATAAACTATCAGGGCAAGCTTCTGCTGTAATTCGCTCCCCATGGAGATATGGTCCTAAGTCTAGTGAAAAACGATTTGATAATGGTTCAGTTCAGGCCACGTCTGCTGAAGGTGACAAGGAAATTACTATTGAACAAAATGGTTCTTTGTCAGACATGCAGAATCCAGATACTGAGAGTAATAGTTCAGAGAATCAAAATACTCGCCCTGCTTTGGATATATCTGATAAGACAAATATGCATTGTGGCAGGGAGAGTGATGCATATGCAGGAAACGATACTCAGGAGGCTGGTGACCATAATAAGATTGTTGGTGAAGTTGATGACATGAAAGAAGTGCCAAATCCTTCTTATAATAACGTTCACACTGACCCAACTGGGATGGGAGGCACAGAACATATATCAGATGCTATCTCGACTTCATATCAAGAATCATTAAGTGAAAAATCCAACTTGCATGACCATAAAGGGAATAAGCATGTGGAGCCTGACTGTTCCCCAACCTCTCTTCAAGAAGGTGATCAAACTTCAAAGGTGAAAATAGATCTTGAGTCAACAGATCTTCTTAACCTAGAAGTATCTTCAAATACACCATCCAGCATGACTTCAGTTTCTGAAGCCCCTTATTCAGGGTATAGAGAAAGCTCGTCGTATGAGGTCATTGCTAATGACCAAATGAATTGCTCATCAACTGCATATCTAGTTGACGAACCACAAAAACCTACCAATATTGACTTTACACTAAATGAAAAACTAGAGAAGTTTTCCTTTGATGAGATAGATAAAGCTGATGTAAGCAGTGGGAATACTGGTGAAGATGCCAGCGATTTCATAAATGCCTTACATAATGCCGAAGAAGAAAGCAATGAAGTGGAGGATGACTTATCTCCAAGTCTGATTTCCAAATCTATTGATGCAAAGAAATCTACTTACGATCCATCCTTATGGACCCCTGCTGAGATACAAATTGCAACAGGAAATGCAGAGTGCACGTTCTTGGAGCACCCTTTATCGCTTAAGAGCACATACACTGAAGCTGTGGACTCTTCAGGAACTAGAGACCCCAATGGTGAACCATTGGTAACCAGTTACAACAAGTGCTTTTTGGGCACTGTTGACTACATTTGGCGATCTGAAGGTCTGCAAACAACCAGAGTTCTTGCTCCAATACCTAAACGTGTCATGGAAAGCACTCAAGGATACCCAACAAAGAAATGGGGTAGTGATCATATTGCCTTGGTTTCGGAGTTGGCTTTCTCGGAAGATGGTACTGCAATCAGCAAGGATGTTGTATAG 2442 0.4337 MRRTPPTIHFLAATDSAFSTATMSSRPYHRGHHRGYSGRSNSGGRGHFVTGDDHLQSVRDANLALRRGESENFANQSQFHQNPPYNLSRHPPPPFYYQNPPYNPRPHPPPQYQNPSYIPRPHPYPHPHRPPHFRQPNDYRREFRPQQNIRPKAPDHREWEVALTPPPARHSERFKVLSYNILADYLAMDHWRQLYYHIPSYMLNWQWRKSKIIFELGLWSADIMCFQEVDRFDELAEDLKFKGYRGIWKMRTGNPVDGCAIFWRTSRFNLLYEESIEFNRFGLRDNVAQICVLEFINQNGSLPPSLTGSRKVVVCNTHVLYNPNRGEIKLGQVRILLDKAQAVSQLWNNSPVIICGDFNCTPKSPLYNFIAEQKLDLSGIDRNKLSGQASAVIRSPWRYGPKSSEKRFDNGSVQATSAEGDKEITIEQNGSLSDMQNPDTESNSSENQNTRPALDISDKTNMHCGRESDAYAGNDTQEAGDHNKIVGEVDDMKEVPNPSYNNVHTDPTGMGGTEHISDAISTSYQESLSEKSNLHDHKGNKHVEPDCSPTSLQEGDQTSKVKIDLESTDLLNLEVSSNTPSSMTSVSEAPYSGYRESSSYEVIANDQMNCSSTAYLVDEPQKPTNIDFTLNEKLEKFSFDEIDKADVSSGNTGEDASDFINALHNAEEESNEVEDDLSPSLISKSIDAKKSTYDPSLWTPAEIQIATGNAECTFLEHPLSLKSTYTEAVDSSGTRDPNGEPLVTSYNKCFLGTVDYIWRSEGLQTTRVLAPIPKRVMESTQGYPTKKWGSDHIALVSELAFSEDGTAISKDVV 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00720 813 Coils Coil 656 676 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 515 529 - -
Trre1g00720 813 SUPERFAMILY DNase I-like 166 379 IPR036691 -
Trre1g00720 813 MobiDBLite consensus disorder prediction 76 138 - -
Trre1g00720 813 Gene3D Endonuclease/exonuclease/phosphatase 146 449 IPR036691 -
Trre1g00720 813 Gene3D Endonuclease/exonuclease/phosphatase 595 810 IPR036691 -
Trre1g00720 813 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 131 801 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 493 558 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 530 544 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 21 53 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 86 124 - -
Trre1g00720 813 Pfam Endonuclease/Exonuclease/phosphatase family 177 378 IPR005135 GO:0003824
Trre1g00720 813 MobiDBLite consensus disorder prediction 407 456 - -
Trre1g00720 813 MobiDBLite consensus disorder prediction 396 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00720 Trre-Chr1 5417739 5430183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00720 205 373 EF-hand Containing Proteins AT5G54130 27.778 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00720 - - gmx:100810446 941.799